A rapidly evolving secretome builds and patterns a sea shell
© Jackson et al; licensee BioMed Central Ltd. 2006
Received: 27 July 2006
Accepted: 22 November 2006
Published: 22 November 2006
Instructions to fabricate mineralized structures with distinct nanoscale architectures, such as seashells and coral and vertebrate skeletons, are encoded in the genomes of a wide variety of animals. In mollusks, the mantle is responsible for the extracellular production of the shell, directing the ordered biomineralization of CaCO3 and the deposition of architectural and color patterns. The evolutionary origins of the ability to synthesize calcified structures across various metazoan taxa remain obscure, with only a small number of protein families identified from molluskan shells. The recent sequencing of a wide range of metazoan genomes coupled with the analysis of gene expression in non-model animals has allowed us to investigate the evolution and process of biomineralization in gastropod mollusks.
Here we show that over 25% of the genes expressed in the mantle of the vetigastropod Haliotis asinina encode secreted proteins, indicating that hundreds of proteins are likely to be contributing to shell fabrication and patterning. Almost 85% of the secretome encodes novel proteins; remarkably, only 19% of these have identifiable homologues in the full genome of the patellogastropod Lottia scutum. The spatial expression profiles of mantle genes that belong to the secretome is restricted to discrete mantle zones, with each zone responsible for the fabrication of one of the structural layers of the shell. Patterned expression of a subset of genes along the length of the mantle is indicative of roles in shell ornamentation. For example, Has-sometsuke maps precisely to pigmentation patterns in the shell, providing the first case of a gene product to be involved in molluskan shell pigmentation. We also describe the expression of two novel genes involved in nacre (mother of pearl) deposition.
The unexpected complexity and evolvability of this secretome and the modular design of the molluskan mantle enables diversification of shell strength and design, and as such must contribute to the variety of adaptive architectures and colors found in mollusk shells. The composition of this novel mantle-specific secretome suggests that there are significant molecular differences in the ways in which gastropods synthesize their shells.
The ability to synthesize rigid, mineralized structures is an essential trait to the majority of metazoan taxa. Vertebrates, echinoderms, mollusks, arthropods, brachiopods, bryozoans, annelids, cnidarians and sponges, amongst others, construct a spectacular diversity of endo- and exo-skeletons as well as sensory and protective structures from a range of minerals . The importance of this trait is highlighted by the observation that the so called 'Cambrian explosion' was accompanied by the diversification of biomineralization mechanisms [2–4], despite the fact that several lineages possessed this ability before the end of the Proterozoic . It is currently unknown whether the molecular mechanisms used to create these structures have been inherited from an ancestral biomineralization repertoire, invented de novo, or are the result of an unprecedented lateral genetic transfer .
The evolutionary origins, mode of construction, patterning and physical properties of the molluskan shell have held the attention of scientists for centuries, however the molecular mechanisms by which these structures are constructed are only now beginning to be elucidated [7–9]. The mollusk shell is assembled extracellularly and is an ensemble of CaCO3 and organic macromolecules (proteins, glycoproteins, lipids and polysaccharides), which are secreted by the mantle epithelium. The anterior edge of the mantle tissue underlies the lip of the shell and directs the ordered biomineralization of the different structural layers of the shell and controls the patterning of architectural and color features. While the structure and function of a number of shell matrix proteins have recently been characterized [7, 10–17], the regulatory mechanisms that govern these shell-building processes remain largely unknown.
It has long been acknowledged that the diversity of shell types found in gastropod, bivalve and scaphopod mollusks are achieved through the ordered secretion of proteins and other molecules along the length of mantle [18–21], however the full complexity and role of differential gene activity in the mantle remains undescribed. The color, structure and geometric pattern of a sea shell is a historical record of the incorporation of proteins into the shell matrix and onto its surface, and directly reflects the gene expression activity of the mantle during the life of a mollusk . Using the vetigastropod Haliotis asinina (tropical abalone) as a model, we sought to determine the complexity of the mantle transcriptome. Abalone shells are composed of three structurally-distinct layers: (i) the inner nacreous (flat pearl) layer, consisting of layers of aragonitic tablets encased within organic sheaths; (ii) the calcitic prismatic layer, also containing organic macromolecules; and (iii) the outer periostracum, a thin organic veneer that protects and decorates the shell . The anterior edge of the abalone mantle epithelium is convoluted and partitioned into discrete zones that produce each of these layers . Within each of these zones are a number of cell types, which contribute to the construction and patterning of the shell [25, 26].
Here we assess the complexity of gene expression in the H. asinina mantle, and explore the regulatory and structural factors that contribute to the construction of the shell. Previous studies have demonstrated that the organic component of the shell (often comprising less than 5% by dry weight) is essential to its construction, and confers its remarkable physical properties. For example, Lustrin-A [11, 27] is thought to impart fracture resistant, elastomeric properties to the nacreous layer, while macromolecules isolated from calcitic or nacreous environments can direct the type of polymorph of CaCO3 that will be deposited in vitro [28–30]. Unfortunately, shell matrix proteins are often insoluble, highly acidic or complexed with minerals, making their purification very difficult . To gain a broader understanding of the molecular processes that underlie seashell construction, we have analyzed expressed sequence tags (ESTs) from the mantle of juvenile H. asinina. This approach allows for the identification of gene products that are not necessarily incorporated into the shell, but are nonetheless crucial for CaCO3 precipitation and other biomineralization events within the pallial space adjacent to the mantle. Other mantle-localized, secreted gene products not involved in biomineralization will also be detected by this methodology. We have compared this EST set with the recently sequenced L. scutum (Patellogastropoda) genome in order to infer the degree of evolutionary conservation between shell building secretomes within one molluskan class.
Results and discussion
Structure of H. asininashell and mantle
The mineralogical composition of the shell is partitioned dorso-ventrally into two major layers; a dorsal calcitic layer and a ventral aragonitic layer (Figure 1d). The mantle epithelium, which secretes the proteins responsible for the construction of these structures, is convoluted at its anterior edge. Between the two main folds (the inner and outer folds) lies the periostracal groove (Figure 1e–g), into which the periostracum is secreted and then extruded onto the dorsal surface of the shell. We have identified a second minor fold within the mantle of H. asinina that we have termed the anterior crease of the outer fold (Figure 1e, f and 1h). Although we cannot yet assign a specific function to this structure, the fact that it possesses an abundance of microvilli (Figure 1h) suggests that it is actively secreting substances responsible for shell or periostracum construction.
Mantle expressed sequence tags
When compared with EST surveys in other metazoan tissues (e.g. various mouse , pufferfish  and human [36, 37] proteomes), a markedly higher proportion (~twofold) of the genes expressed in the abalone mantle encode secreted proteins. By extrapolation, we estimate that hundreds of proteins are released extracellularly from the mantle, and contribute to the fabrication of the shell. This estimate however needs to take into consideration non-biomineralizing secreted proteins that do not possess similarity with previously described GenBank sequences. This estimate is in marked contrast to the current number of biomineralizing proteins isolated from the shells of other gastropods and bivalves. With efforts chiefly focused on the characterization of proteins from the nacreous layer [38–41], fewer than 20 protein families have been shown to contribute to shell formation to date [7, 8]. Strikingly, of the 85 unigenes that encode putative secreted proteins in the Haliotis asinina mantle, 67 (80% of the secretome) do not share significant similarity to any sequences in GenBank (Figure 2). However, several novel secreted open reading frames (ORFs) possess motifs comparable to proteins in other organisms, such as GGYGLGL repeats – similar to the elasticity regions of Spidroin, an elastomeric spider silk protein  – and proline-rich repeats (LXPLSXIPVXXPXAX) as found in plant cell walls . In comparison, 140 of the 246 intracellular genes (57%) do not match sequences in GenBank.
Interestingly, BLAST alignments between H. asinina mantle ESTs and genomic trace sequences from the gastropod L. scutum, which is estimated to be sequenced to 8× coverage and is currently being assembled , reveals that only 13 of the 67 (19%) novel secreted proteins in Haliotis appear to have identifiable homologues in the Lottia genome (Additional file 2). These 13 genes may be involved in conserved aspects of shell construction in gastropods and possibly other mollusks. In contrast, the remaining 54 novel secreted proteins are likely to either represent genes that evolved after these gastropod lineages split, have been lost in the Lottia lineage or a combination of these two scenarios. Likewise, many previously discovered molluskan shell matrix genes do not have clear homologues in the Lottia genome (See Additional File 3 for results of these searches against Lottia genome traces). The few shell matrix proteins, such as Lustrin , Perlucin  and Mucoperlin , are likely to be conserved components of molluskan shells, although their general function in shell fabrication and evolutionary origins are currently unknown. Together, these data suggest that the complex secretome involved in mollusk shell construction is encoded primarily by rapidly evolving genes.
Localized expression of mantle genes
Blue pigmentation gene
The spatial expression profiles of the genes surveyed here support the supposition that specific mantle zones influence the crystal morphology of discrete layers of the mature shell. Underlying these structural differences is a zone-specific secretome. It appears likely that highly dynamic gene expression patterns along the length of a given mantle zone contribute to shell patterning. In the case of juvenile H. asinina, these patterns include: the ridge and valley architecture; the periodic formation of respiratory pores, the regular deposition of blue and orange colored dots on the ridges, and the swathes of cream and red/brown fields that cover the shell. The correspondence of HasSom expression with shell coloration indicates that there are direct relationships between gene expression and shell patterns, which allows for understanding the molecular basis of structural and color patterning.
The modular design of the molluskan mantle [24, 58], along with distinct patterning mechanisms within each zone, allows for immense variation in shell structure and pattern in shell-building mollusks. This morphogenetic system, combined with a complex and rapidly evolving secretome, as revealed here, is likely to have provided the foundation from which the incredible diversity of molluskan shell shapes and patterns has evolved. Despite the advantages of this approach to the rapid identification of novel biomineralizing proteins, it must be pointed out that common post-translational modifications (glycosylation, lipid transfer etc.) that are likely to greatly increase the diversity of the organic matrix, will not be detected by this approach, and further underscores the fact that we are some way from a detailed understanding of how nature generates these functional and beautiful structures.
Library construction, sequencing and EST annotation
A directionally cloned cDNA library was constructed from total RNA extracted from the mantle tissue of ten 7–15 mm juvenile H. asinina using a BD Biosciences SMART library construction kit. Phages were converted into plasmid DNA following the manufacturer's instructions and sequenced using ABI chemistry v 3.1 . EST sequences were clustered using ClustalW [60, 61] and inspected visually to yield consensus contiguous sequences and a non-redundant collection of ESTs. ESTs were first annotated based on SWISSPROT and NCBI nucleotide, protein and EST database searches at the National Center for Biotechnology Information (NCBI) using the BLAST  family of programs  and classified according to function . At the time of writing 900,172,457 L. scutum traces were available from the NCBI trace archive . These traces were downloaded and searched against our dataset using the standalone BLAST package (TBLASTx and TBLASTn algorithms with default gap costs and the BLOSUM62 matrix). Putative ORFs were identified in ESTs either through sequence similarity or ORF Finder  and manual inspection. Among the novel ESTs (those ESTs sharing no significant similarity with publicly available sequences) only ORFs larger than 50 codons, encoded by the positive strand, and beginning with a methionine residue were accepted. All conceptually derived protein sequences were assessed for the presence of a leader sequence using the SignalP 3.0  server  and were classified into extracellular or intracellular categories. An EST encoding a novel protein was only accepted as destined for secretion if both SignalP 3.0 algorithms (neural network and hidden Markov model) identified the presence of a signal peptide and a cleavage site, and if the Markov model probability was higher than 90% (in most cases this was >95%). Sequences are deposited at NCBI under accession numbers DW986183 to DW986511. Has-vm2 and Has-lustrin have accession numbers DQ298397 and DQ298402 respectively.
In situhybridization, histology and electron microscopy
Juveniles (1–10 mm) of H. asinina were relaxed with 1 M MgCl2 in seawater and then fixed for 1 h in 4% paraformaldehyde, 0.1 M 3-(N-morpholino) propane sulfonic acid pH 7.5, (MOPS), 2 mM MgSO4, 1 mM ethyleneglycoltetra-acetic acid (EGTA) and 0.5 M NaCl. Fixed animals were then washed five times with 100% ethanol and stored in 75% ethanol at -20°C. All DIG-labeled riboprobes were produced using either SP6, T3 or T7 RNA polymerase and a PCR amplicon of the desired clone. Several sense controls were performed with probes of various GC contents and lengths to assess background patterns. Endogenous alkaline phosphatase activity of the mantle tissue was also assessed and found not to be present following the in situ procedure. Whole mount in situ hybridization (WMISH) was performed as previously described  usually at a hybridization temperature of 62°C. Sections (6 μm) were produced by mounting juveniles that had undergone WMISH in EPON 812 and sectioning using a Leica Ultracut T. Prior to WMISH shells were removed by incubation in 1× PBS, 4% paraformaldehyde and 350 mM EDTA. Gene expression within the mantle was correlated to shell patterning activity by photographing individual shells prior to decalcification and relating this to WMISH results.
For transmission electron microscopy, juveniles were relaxed as described above and mantle tissue was dissected and processed according to . Briefly, tissue was prefixed in low osmium (0.05% OsO4 in 4% glutaraldehyde, 0.2 M Na cacodylate, 0.1 M NaCl and 0.35 M sucrose, pH 7.2) for 10 min. This was followed with a primary fixation in the same fixative, but lacking osmium, for 1 h. The tissue was then washed twice in buffer (0.3 M NaCl and 0.2 M Na cacodylate, pH 7.2) before a post fixation in osmium (1% OsO4, 0.3 M NaCl and 0.2 M Na cacodylate, pH 7.2) for 1 h. Samples were then dehydrated through a graded series of ethanol, embedded in EPON 812 and 60 nm sections taken using a Leica Ultracut T. Sections were stained with uranyl acetate and lead citrate and viewed in a JEOL JEM 1010 transmission electron microscope at 80 kV.
For scanning electron microscopy, whole juveniles with the shell removed were fixed and dehydrated as described above, then infiltrated and dried overnight in hexamethyldisilisane. Juveniles and unfixed shells were mounted on stubs, sputter-coated with platinum and viewed in a JEOL JSM 6300 scanning electron microscope at 15 kV.
This work was supported by grants from the Australia Research Council and The University of Queensland to B.M.D. and the German Research Foundation (DFG, Project Wo896/4-1 COSMAP) to G.W. The QDPI Bribie Island Aquaculture Research Centre kindly provided research support and provision of culturing facilities. Oliver Voigt kindly assisted with Perl scripts. Lottia genomic sequences used in this study are in the public domain. We acknowledge the significant contribution of US Department of Energy Joint Genome Institute and the Lottia sequencing group in producing this genomic resource.
- Dove PM, De Yoreo JJ, Weiber S, (Eds): Biomineralization. 2004, Mineralogical Society of America
- Marshall CR: Nomothetism and understanding the Cambrian "explosion". Palaios. 2005, 13: 195-196.
- Knoll AH: Biomineralization and evolutionary history. Rev Mineral Geochem. 2003, 54: 329-356. 10.2113/0540329.View Article
- Morris SC: The Cambrian "explosion": slow-fuse or megatonnage?. Proc Natl Acad Sci USA. 2000, 97: 4426-4429. 10.1073/pnas.97.9.4426.View Article
- Porter SM, Meisterfeld R, Knoll AH: Vase-shaped microfossils from the Neoproterozoic Chuar group, Grand Canyon: a classification guided by modern testate amoebae. J Paleontology. 2003, 77: 409-429. 10.1666/0022-3360(2003)077<0409:VMFTNC>2.0.CO;2.View Article
- Kirschvink JL, Hagadorn JW: A grand unified theory of biomineralization. The Biomineralisation of Nano- and Micro-Structures. Edited by: Weinheim BE. 2000, Wiley, 139-150.
- Marin F, Luquet G: Molluscan shell proteins. Comptes Rendus Palevol. 2004, 3: 469-492. 10.1016/j.crpv.2004.07.009.View Article
- Wilt FH, Killian CE, Livingston BT: Development of calcareous skeletal elements in invertebrates. Differentiation. 2003, 71: 237-250. 10.1046/j.1432-0436.2003.7104501.x.View ArticlePubMed
- Wilt FH: Developmental biology meets materials science: morphogenesis of biomineralized structures. Dev Biol. 2005, 280: 15-25. 10.1016/j.ydbio.2005.01.019.View ArticlePubMed
- Weiner S, Sagi I, Addadi L: Choosing the crystallization path less traveled. Science. 2005, 309: 1027-1028. 10.1126/science.1114920.View ArticlePubMed
- Shen XY, Belcher AM, Hansma PK, Stucky GD, Morse DE: Molecular cloning and characterization of lustrin A, a matrix protein from shell and pearl nacre of Haliotis rufescens. J Biol Chem. 1997, 272: 32472-32481. 10.1074/jbc.272.51.32472.View ArticlePubMed
- Duplat D, Puissegur M, Bedouet L, Rousseau M, Boulzaguet H, Milet C, Sellos D, Van Wormhoudt A, Lopez E: Identification of calconectin, a calcium-binding protein specifically expressed by the mantle of Pinctada margaritifera. FEBS Lett. 2006, 580: 2435-2441. 10.1016/j.febslet.2006.03.077.View ArticlePubMed
- Weiss IM, Gohring W, Fritz M, Mann K: Perlustrin, a Haliotis laevigata (Abalone) nacre protein, is homologous to the insulin-like growth factor binding protein N-terminal module of vertebrates. Biochem Biophys Res Comm. 2001, 285: 244-249. 10.1006/bbrc.2001.5170.View ArticlePubMed
- Mann K, Weiss IM, Andre S, Gabius H-J, Fritz M: The amino-acid sequence of the abalone (Haliotis laevigata) nacre protein perlucin. Detection of a functional C-type lectin domain with galactose/mannose specificity. Eur J Biochem. 2000, 267: 5257-5264. 10.1046/j.1432-1327.2000.01602.x.View ArticlePubMed
- Miyamoto H, Miyashita T, Okushima M, Nakano S, Morita T, Matsushiro A: A carbonic anhydrase from the nacreous layer in oyster pearls. Proc Natl Acad Sci USA. 1996, 93: 9657-9660. 10.1073/pnas.93.18.9657.PubMed CentralView ArticlePubMed
- Samata T, Hayashib N, Konoa M, Hasegawac K, Horitad C, Akerad S: A new matrix protein family related to the nacreous layer formation of Pinctada fucata. FEBS Lett. 1999, 462: 225-229. 10.1016/S0014-5793(99)01387-3.View ArticlePubMed
- Addadi L, Joester D, Nudelman F, Weiner S: Mollusk shell formation: a source of new concepts for understanding biomineralization processes. Chemistry – A European Journal. 2006, 12: 980-987. 10.1002/chem.200500980.View Article
- Lowenstam HA, Weiner S, (Eds): On Biomineralization. 1989, Oxford, Oxford University Press
- Weiner S, Traub W: Macromolecules in mollusk shells and their functions in biomineralization. Phil Trans Royal Soc London B- Biol Sci. 1984, 304: 425-&.View Article
- Wainwright SA: Stress and design in bivalved mollusc shell. Nature. 1969, 224: 777-779. 10.1038/224777a0.View Article
- Kniprath E: Ontogeny of the molluscan shell field – a review. Zoologica Scripta. 1981, 10: 61-79. 10.1111/j.1463-6409.1981.tb00485.x.View Article
- Brusca RC, Brusca GJ: Invertebrates. 2002, Sinauer, Second
- Saleuddin ASM, Petit HP: The mode of formation and the structure of the periostracum. The Mollusca. Edited by: Saleuddin ASM, Wilbur KM. 1983, New York. Academic Press, 4:
- Jolly C, Berland S, Milet C, Borzeix S, Lopez E, Doumenc D: Zonal localization of shell matrix proteins in mantle of Haliotis tuberculata (Mollusca, Gastropoda). Mar Biotech. 2004, 6: 541-551. 10.1007/s10126-004-3129-7.View Article
- Saleuddin ASM: An electron microscopic study of the formation and structure of the periostracum in Astarte (Bivalvia). Can J Zoology. 1974, 52: 1463-1471.View Article
- Bevelander G, Nakahara H: An electron microscope study of the formation and structure of the periostracum of a gastropod, Littorina littorea. Calc Tiss Int. 1970, 5: 1-12. 10.1007/BF02017528.View Article
- Zhang B, Wustman BA, Morse D, Evans JS: Model peptide studies of sequence regions in the elastomeric biomineralization protein, lustrin A. I. The C-domain consensus-PG-, -NVNCT-motif. Biopolymers. 2002, 63: 358-369. 10.1002/bip.10069.View ArticlePubMed
- Thompson JB, Paloczi GT, Kindt JH, Michenfelder M, Smith BL, Stucky G, Morse DE, Hansma PK: Direct observation of the transition from calcite to aragonite growth as induced by abalone shell proteins. Biophys J. 2000, 79: 3307-3312.PubMed CentralView ArticlePubMed
- Falini G, Albeck S, Weiner S, Addadi L: Control of aragonite or calcite polymorphism by mollusk shell macromolecules. Science. 1996, 271: 67-69. 10.1126/science.271.5245.67.View Article
- Zaremba CM, Belcher AM, Fritz M, Li YL, Mann S, Hansma PK, Morse DE, Speck JS, Stucky GD: Critical transitions in the biofabrication of abalone shells and flat pearls. Chem Mater. 1996, 8: 679-690. 10.1021/cm9503285.View Article
- Gotliv BA, Addadi L, Weiner S: Mollusk shell acidic proteins: in search of individual functions. Chem Biochem. 2003, 4: 522-529.
- Jackson D, Williams KC, Degnan BM: Suitability of Australian formulated diets for aquaculture of the tropical abalone Haliotis asinina Linnaeus. J Shellfish Res. 2001, 20: 627-636.
- Li S, Xie LP, Zhang C, Zhang Y, Gu MZ, Zhang RQ: Cloning and expression of a pivotal calcium metabolism regulator: calmodulin involved in shell formation from pearl oyster (Pinctada fucata). Comp Biochem Physiol B. 2004, 138: 235-243. 10.1016/j.cbpc.2004.03.012.View ArticlePubMed
- Zhang Y, Meng QX, Jiang TM, Wang HZ, Xie LP, Zhang RQ: A novel ferritin subunit involved in shell formation from the pearl oyster (Pinctada fucata). Comparative Biochemistry and Physiology B. 2003, 135: 43-54. 10.1016/S1096-4959(03)00138-6.View Article
- Grimmond SM, Miranda KC, Yuan Z, Davis MJ, Hume DA, Yagi K, Tominaga N, Bono H, Hayashizaki Y, Okazaki Y, et al: The mouse secretome: functional classification of the proteins secreted into the extracellular environment. Gen Res. 2003, 13: 1350-1359. 10.1101/gr.983703.View Article
- Klee EW, Carlson DF, Fahrenkrug SC, Ekker SC, Ellis LBM: Identifying secretomes in people, pufferfish and pigs. Nucleic Acids Research. 2004, 32: 1414-1421. 10.1093/nar/gkh286.PubMed CentralView ArticlePubMed
- Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J, Chow B, Chui C, Crowley C, et al: The Secreted Protein Discovery Initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: A bioinformatics assessment. Gen Res. 2003, 13: 2265-2270. 10.1101/gr.1293003.View Article
- Katti KS, Katti DR, Pradhan SM, Bhosle A: Platelet interlocks are the key to toughness and strength in nacre. J Mat Res. 2005, 20: 1097-1100. 10.1557/JMR.2005.0171.View Article
- Nassif N, Pinna N, Gehrke N, Antonietti M, Jager C, Colfen H: Amorphous layer around aragonite platelets in nacre. Proc Natl Acad Sci USA. 2005, 102: 12653-12655. 10.1073/pnas.0502577102.PubMed CentralView ArticlePubMed
- Lin A, Meyers MA: Growth and structure in abalone shell. Mat Sci Eng A. 2005, 390: 27-41. 10.1016/j.msea.2004.06.072.View Article
- Fu G, Valiyaveettil S, Wopenka B, Morse DE: CaCO3 biomineralization: acidic 8-kDa proteins isolated from aragonitic abalone shell nacre can specifically modify calcite crystal morphology. Biomacromolecules. 2005, 6: 1289-1298. 10.1021/bm049314v.View ArticlePubMed
- van Beek JD, Hess S, Vollrath F, Meier BH: The molecular structure of spider dragline silk: folding and orientation of the protein backbone. Proc Natl Acad Sci USA. 2002, 99: 10266-10271. 10.1073/pnas.152162299.PubMed CentralView ArticlePubMed
- Wilson RC, Long F, Maruoka EM, Cooper JB: A new proline-rich early nodulin from Medicago truncatula is highly expressed in nodule meristematic cells. Plant Cell. 1994, 6: 1265-1275. 10.1105/tpc.6.9.1265.PubMed CentralView ArticlePubMed
- JGI sequencing plans. [http://www.jgi.doe.gov/sequencing/cspseqplans.html]
- Weiss IM, Kaufmann S, Mann K, Fritz M: Purification and characterization of Perlucin and Perlustrin, two new proteins from the shell of the mollusc Haliotis laevigata. Biochem Biophys Res Comm. 2000, 267: 17-21. 10.1006/bbrc.1999.1907.View ArticlePubMed
- Marin F, Corstjens P, de Gaulejac B, de Vrind-De Jong E, Westbroek P: Mucins and molluscan calcification. Molecular characterization of mucoperlin, a novel mucin-like protein from the nacreous shell layer of the fan mussel Pinna nobilis (Bivalvia, Pteriomorphia). J Bio Chem. 2000, 275: 20667-20675. 10.1074/jbc.M003006200.View Article
- Wustman BA, Weaver JC, Morse DE, Evans JS: Characterization of a Ca(II)-, mineral-interactive polyelectrolyte sequence from the adhesive elastomeric biomineralization protein lustrin A. Langmuir. 2003, 19: 9373-9381. 10.1021/la034857w.View Article
- Wustman BA, Morse DE, Evans JS: Structural analyses of polyelectrolyte sequence domains within the adhesive elastomeric biomineralization protein Lustrin A. Langmuir. 2002, 18: 9901-9906. 10.1021/la025927m.View Article
- Smith BL, Schaffer TE, Viani M, Thompson JB, Frederick NA, Kindt J, Belcher A, Stucky GD, Morse DE, Hansma PK: Molecular mechanistic origin of the toughness of natural adhesives, fibres and composites. Nature. 1999, 399: 761-763. 10.1038/21607.View Article
- Wustman BA, Weaver JC, Morse DE, Evans JS: Structure-function studies of the Lustrin A polyelectrolyte domains, RKSY and D4. Conn Tiss Res. 2003, 44: 10-15.View Article
- Li S, Xie LP, Ma ZJ, Zhang RQ: cDNA cloning and characterization of a novel calmodulin-like protein from pearl oyster Pinctada fucata. FEBS J. 2005, 272: 4899-4910. 10.1111/j.1742-4658.2005.04899.x.View ArticlePubMed
- Meinhardt H, Prusinkiewicz P, Fowler DR: The Algorithmic Beauty of Sea Shells. 1995, Berlin Springer-VerlagView Article
- Meinhardt H, Klinger M: A model for pattern formation on the shells of molluscs. J Theoretical Biol. 1987, 126: 63-89. 10.1016/S0022-5193(87)80101-7.View Article
- Orti G, Meyer A: Molecular evolution of ependymin and the phylogenetic resolution of early divergences among euteleost fishes. Molecular Biology and Evolution. 1996, 13: 556-573.View ArticlePubMed
- Shashoua VE: Monomeric and polymeric forms of ependymin: a brain extracellular glycoprotein implicated in memory consolidation processes. Neurochem Res. 1988, 13: 649-655. 10.1007/BF00973283.View ArticlePubMed
- Suarez-Castillo EC, Medina-Ortiz WE, Roig-Lopez JL, Garcia-Arraras JE: Ependymin, a gene involved in regeneration and neuroplasticity in vertebrates, is overexpressed during regeneration in the echinoderm Holothuria glaberrima. Gene. 2004, 334: 133-143. 10.1016/j.gene.2004.03.023.View ArticlePubMed
- Ganss B, Hoffmann W: Calcium-binding to sialic acids and Its effect on the conformation of ependymins. Eur J Biochem. 1993, 217: 275-280. 10.1111/j.1432-1033.1993.tb18243.x.View ArticlePubMed
- Winther RG: Varieties of modules: kinds, levels, origins, and behaviors. J Exp Biol. 2001, 291: 116-129.
- Sambrook J, Russell DW: Molecular cloning: a laboratory manual. 2001, Cold Spring Harbor, New York Cold Spring Harbor Laboratory Press, 3
- Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD: Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003, 31: 3497-3500. 10.1093/nar/gkg500.PubMed CentralView ArticlePubMed
- ClustalW. [http://www.ebi.ac.uk/clustalw/index.html]
- Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.PubMed CentralView ArticlePubMed
- BLAST. [http://www.ncbi.nlm.nih.gov/BLAST/]
- Lee Y-H, Huang GM, Cameron RA, Graham G, Davidson EH, Hood L, Britten RJ: EST analysis of gene expression in early cleavage-stage urchin embryos. Development. 1999, 126: 3857-3867.PubMed
- Trace archive. [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?]
- ORF finder. [http://www.ncbi.nlm.nih.gov/gorf/orfig.cgi]
- Dyrlov Bendtsen J, Nielsen H, von Heijne G, Brunak S: Improved prediction of signal peptides: SignalP 3.0. J Mol Biol. 2004, 340: 783-795. 10.1016/j.jmb.2004.05.028.View Article
- SignalP 3.0. [http://www.cbs.dtu.dk/services/SignalP/]
- Giusti AF, Hinman VF, Degnan SM, Degnan BM, Morse DE: Expression of a Scr/Hox5 gene in the larval central nervous system of the gastropod Haliotis, a non-segmented spiralian lophotrochozoan. Evol Dev. 2000, 2: 294-302. 10.1046/j.1525-142x.2000.00071.x.View ArticlePubMed
- Eisenman EA, Alfert M: A new fixation procedure for preserving the ultrastructure of marine invertebrate tissues. J Microscopy. 1982, 125: 117-120.View Article
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.