Specific retention of the protostome-specific PsGEF may parallel with the evolution of mushroom bodies in insect and lophotrochozoan brains
© Higuchi et al.; licensee BioMed Central Ltd. 2009
Received: 22 February 2009
Accepted: 07 May 2009
Published: 07 May 2009
Gene gain and subsequent retention or loss during evolution may be one of the underlying mechanisms involved in generating the diversity of metazoan nervous systems. However, the causal relationships acting therein have not been studied extensively.
We identified the gene PsGEF (protostome-specific GEF), which is present in all the sequenced genomes of insects and limpet but absent in those of sea anemones, deuterostomes, and nematodes. In Drosophila melanogaster, PsGEF encodes a short version of a protein with the C2 and PDZ domains, as well as a long version with the C2, PDZ, and RhoGEF domains through alternative splicing. Intriguingly, the exons encoding the RhoGEF domain are specifically deleted in the Daphnia pulex genome, suggesting that Daphnia PsGEF contains only the C2 and PDZ domains. Thus, the distribution of PsGEF containing the C2, PDZ, and RhoGEF domains among metazoans appears to coincide with the presence of mushroom bodies. Mushroom bodies are prominent neuropils involved in the processing of multiple sensory inputs as well as associative learning in the insect, platyhelminth, and annelid brains. In the adult Drosophila brain, PsGEF is expressed in mushroom bodies, antennal lobe, and optic lobe, where it is necessary for the correct axon branch formation of alpha/beta neurons in mushroom bodies. PsGEF genetically interacts with Rac1 but not other Rho family members, and the RhoGEF domain of PsGEF induces actin polymerization in the membrane, thus resulting in the membrane ruffling that is observed in cultured cells with activated forms of Rac.
The specific acquisition of PsGEF by the last common ancestor of protostomes followed by its retention or loss in specific animal species during evolution demonstrates that there are some structural and/or functional features common between insect and lophotrochozoan nervous systems (for example, mushroom bodies), which are absent in all deuterostomes and cnidarians. PsGEF is therefore one of genes associated with the diversity of metazoan nervous systems.
A comparison of the genomes of five insects and five vertebrates revealed that there were approximately 1,000 genes present in all the insects but absent in the vertebrates. In contrast, there were approximately 5,000 genes present in all the vertebrates but absent in the insects . The number of vertebrate-specific genes is five times larger than that of insect-specific genes, thus indicating that vertebrates have more complex gene pools than insects. Some of these genes have been acquired in order to support insect- and vertebrate-specific characteristics during evolution. However, if some of these vertebrate genes are shared with lophotrochozoans (the third large superphylum of Bilateria), this would imply that they were present in the last common ancestor of Bilateria (Urbilateria) and have been lost from insects during evolution [2, 3]. A number of genes categorized to this group have already been reported and characterized . Meanwhile, if some of these insect genes are shared with lophotrochozoans, this would suggest that they were specifically acquired by the last common ancestor of protostomes but not deuterostomes. Such genes have not been reported to date.
The origin and evolution of the metazoan central nervous system (CNS) have been intensively discussed. Large-scale expression analysis of neural genes in hemichordates has revealed that the mediolateral patterning genes (Pax6, dbx, and msx) and neural differentiation markers are expressed around the circumference of the embryo [5, 6]. These results suggest that the centralization of a nervous system was acquired independently in deuterostomes and protostomes . Meanwhile, several studies on the development of the CNS in Drosophila melanogaster and mouse have revealed common genetic patterning mechanisms in the formation of the insect and vertebrate brain. In both insects and vertebrates, the correct regionalization and neuronal identity of the anterior brain region is regulated by the cephalic gap genes otd/Otx and ems/Emx, whereas patterning of the posterior brain involves members of the Hox genes . A recent study on gene expression patterns in the brain of developing annelids (Platynereis) has demonstrated that the patterning mechanism of the CNS is well conserved among chordates and annelids . These studies strongly indicate that Urbilateria already had an anatomically complex CNS. Furthermore, cross-species comparisons of genome sequences and expressed sequence tag data sets have demonstrated the presence of a common ancestral CNS at the molecular level [3, 10]. These results suggest that Urbilateria and the last common ancestor of protostomes were genetically complex, and have complex nervous systems .
Mushroom bodies (MBs) are lobed neuropils that comprise long and approximately parallel axons originating from clusters of minute basophilic cells located dorsally in the most anterior neuromere of the CNS. Structures with these morphological properties are found in many marine annelids (lophotrochozoa) and almost all arthropods (ecdysozoa) except crustaceans . MBs are higher multisensory centers (for example, olfaction and vision) of the insect brain and are implicated in olfactory and other forms of associative learning . There are two possibilities regarding the presence of MBs in different animal lineages (arthropod groups except crustacea and lophotrochozoa). One possibility is that the ancient MB-like structure was present in the CNS of the last common ancestor of all protostomes, and then some species have evolved the present MBs but the others have lost it secondarily during evolution. Another possibility is that MBs have independently evolved several times in different animal lineages by convergent evolution. It was reported that several genes encoding transcription factors, eyeless (ey), twin of eyeless (toy), and dachsund (dac), are necessary for the development of the Drosophila MB [13–15]. Their homologs are present in various metazoan genomes, and Pax6 (the vertebrate homolog of ey), for example, also has essential roles for neural development . To prove the single origin of MBs, it will be necessary to demonstrate that the expression domains of the above genes are conserved in the arthropod and lophotrochozoan CNS during development.
Here, we report a novel gene, namely PsGEF (GEF, guanine nucleotide exchange factor), which is present in insect and Lottia (lophotrochozoa) genomes but absent in Nematostella (cnidaria), deuterostome, and nematode genomes. It is likely that PsGEF was specifically acquired by the last common ancestor of protostomes, and then lost in some species, for example nematodes. Intriguingly, the presence of PsGEF containing the C2, PDZ, and RhoGEF domains appears to coincide with the presence of MBs. Further, in Drosophila, PsGEF functions as a GEF for Rac and is essential for axon development in MBs. These results suggest that gain, retention, and loss of PsGEF are associated with some structural and/or functional features common between insect and lophotrochozoan nervous systems, which are absent in all deuterostomes and cnidarians. Thus, PsGEF is one of candidate genes associated with the diversity of metazoan nervous systems.
Identification of PsGEF gene uniquely shared between insects and limpets
A large-scale comparison of the genomes of five insects (D. melanogaster, Anopheles gambiae, Aedes aegypti, Apis mellifera, and Tribolium castaneum) and five vertebrates (Homo sapiens, Mus musculus, Monodelphis domestica, Gallus gallus, and Tetraodon nigroviridis) revealed that there were approximately 1,000 insect-specific orthologous genes . We searched among these genes for those that are highly expressed in the Drosophila CNS by screening transgenic lines in which GAL4 was inserted in the promoter regions of candidate genes, in order to understand the genetic basis for the development and functions specific for the insect nervous system. From the screening, we found one gene, the PsGEF gene (CG14045).
DmPsGEF orthologs are also present in the genomes of Nasonia vitripenis (parasitic wasp), Pediculus humanus corporis (human body louse), and Acyrthosiphon pisum (pea aphid). The proteins encoded by these contain C2, PDZ, and RhoGEF domains, similar to the long version of the DmPsGEF. PsGEF was therefore present in the common ancestor of holometabolous and hemimetabolous insects. Further, we searched for insect PsGEF orthologs in the genomes of Nematostella vectensis (sea anemone, cnidaria), Strongylocentrotus purpuratus (sea urchin), Ciona intestinalis (sea squirt), Lottia gigantea (limpet, lophotrochozoa), and Caenorhabditis elegans. We have found that only Lottia contains an insect PsGEF ortholog coding for a protein containing the C2, PDZ, and RhoGEF domains. As PsGEF has a complex domain organization, it may be difficult to identify the orthologs if they contain very large introns in some cases. PsGEF is present in insects (ecdysozoa) and limpet (lophotrochozoa) but not sea anemone or deuterostomes, suggesting that PsGEF was specifically acquired by the last common ancestor of protostomes. Drosophila (DmPsGEF), Tribolium (TcPsGEF), Pediculus (PhcPsGEF), Apis (AmPsGEF), and Lottia (LgPsGEF) PsGEFs (Additional file 1) share the C2, PDZ, and RhoGEF domains as shown in Figure 1C. The alignment of amino acid sequences containing the above functional domains of five PsGEF proteins demonstrates that they show significant similarity only in the C2, PDZ, and RhoGEF domains (Additional file 2). This was also the case when the full-length amino acid sequences were analyzed (data not shown).
Daphnia PsGEF lacks RhoGEF domain
The above results indicate that PsGEF with the C2, PDZ, and RhoGEF domains is specifically present in lophotrochozoan and insect genomes but not in crustacean genomes. This distribution among metazoans accurately coincides with the presence of MBs, prominent neuropils involved in processing multiple sensory inputs as well as associative learning in the insect, platyhelminth, and annelid brains . We therefore tested whether PsGEF plays a role in the development or functions of MB in Drosophila.
Region-specific expression of DmPsGEF in the embryonic and adult central nervous system
DmPsGEF is necessary for the axon development of mushroom bodies
For a more accurate analysis of the role of DmPsGEF in the development of MBs, the morphology of alpha/beta neurons at a single-cell level was examined by using the mosaic analysis with a repressible cell marker (MARCM) system . The wild-type alpha/beta neurons bifurcate their axons into the alpha and beta lobes (Figure 6F); however, 34% of late-born dmPsGEF Δ21 alpha/beta neurons (n = 35) have branching defects, and the axons toward the alpha lobe are missing (Figures 6G and 6H). These results demonstrate that DmPsGEF is necessary for the correct axonal development of alpha/beta neurons in MBs.
DmPsGEF genetically interacts with Rac1 but not other Rho family members for the axon development in mushroom bodies
DmPsGEF functions as a GEF for Rac in cultured cells
Genes specifically necessary for the development and/or functions of the insect nervous system
We are interested in discovering the specific molecular features underlying the functions of insect nervous systems. There are several properties specific to the insect nervous system. One of the characteristics of the holometabolous insect brain is the development of the brain from the larval to the adult stages during metamorphosis. Although the overall brain organization is preserved during metamorphosis, dramatic remodeling of neuronal circuits occurs. Some embryonic and early larval neurons die, and others undergo axon pruning and regrowth. Furthermore, many neurons are born during metamorphosis . The genes involved in neuronal remodeling and metamorphosis might be specific to the insect genomes. With regard to the structural characteristics of the insect brain, MBs are specific neuropil structures found in many marine annelids and almost all arthropod groups, except crustaceans . MBs are lobed neuropils that comprise long and approximately parallel axons originating from clusters of minute basophilic cells located dorsally in the most anterior neuromere of the CNS. MBs are higher olfactory and multisensory centers of the insect brain and are implicated in odor discrimination and in olfactory and other forms of associative learning . It is not known how MBs evolved in different taxa. There may be some common genes among annelids and insects, and they may have a role in the evolution of MBs. PsGEF may be one of these genes.
Origin and evolution of PsGEF
We first identified PsGEF as an insect-specific gene, which is highly expressed in the Drosophila CNS. It is present in the sequenced genomes of insects but not vertebrates. A search for PsGEF orthologs in other sequenced genomes revealed that PsGEF is present in the parasitic wasp, the human body louse, and, surprisingly, the limpet Lottia. Due to the phylogenetic distance between insects and limpets, it is unlikely that PsGEF independently evolved in these taxa. In fact, a domain-by-domain phylogenetic analysis of RhoGEFs from different species demonstrates that the C2, PDZ, and RhoGEF domains of LgPsGEF cluster with those of insect PsGEFs, and do not branch with those of different families (data not shown). Thus, it is unlikely that PsGEFs have been independently generated by exon shuffling (or exon capture) in the lophotrochozoan and insect lineages. The exon-intron structures of five PsGEFs from different species also support this conclusion since the positions as well as phases of some introns are conserved in the C2, PDZ, and RhoGEF domain-coding regions (Figure 2). This may suggest that the last common ancestor of protostomes gained the intron-rich ancestor of PsGEF, and some of these ancient introns have been lost, and some new introns have been gained in each species, as demonstrated with, for example, nuclear OXPHOS genes .
Apparently, intron loss has been most extensive in DmPsGEF. PsGEF was absent in Urbilateria, and then specifically acquired by the common ancestor of all protostomes but not deuterostomes or cnidarians. How was the ancient PsGEF originated? Since vertebrates possess RGS3 with C2 and PDZ domains similar to the short form of DmPsGEF, this gene was present in Urbilateria. It then acquired the exons encoding the RhoGEF domain by exon shuffling or exon capture from the different families to generate PsGEF . Intriguingly, PsGEF is absent in nematodes, suggesting that it has been secondarily lost from some ecdysozoan species. Since it has been demonstrated that the evolutionary rates of insects and nematodes are fast and comparable [2, 3, 32], it is difficult to imagine that nematodes evolved an alternative pathway or paralogs of PsGEF to compensate for the absence of PsGEF and insects failed to evolve such systems. A more plausible explanation is that PsGEF has been selectively retained in the insect and limpet genomes because it continues to play an important role in these animals but not in nematodes.
An analysis of the Daphnia genome revealed that the Daphnia PsGEF contains only the C2 and PDZ domains, and it corresponds to the short form of DmPsGEF. The exons encoding RhoGEF domains are apparently missing in the Daphnia genome (Figure 3). This demonstrates that the exons encoding the RhoGEF domain were specifically deleted in crustaceans after split from a common ancestor of crustaceans and insects [33, 34]. These results suggest that Daphnia PsGEF cannot function as a RhoGEF, which is critical for MB axon development (Figure 7 and see below). Thus, PsGEF containing the C2, PDZ, and RhoGEF domains appears to be present only in the limpet Lottia and insects but not in crustaceans. Although it is not known whether MB-like structures are present in the limpet brain, this distribution pattern among metazoans coincides with the presence of MBs in the brains of certain platyhelminthes, marine annelids, and insects but not crustaceans . These results suggest that PsGEF may be associated with the evolution of MB-like brain structures and is, in fact, necessary for MB axon development in Drosophila (Figure 6).
Molecular functions of PsGEF
Alternative splicing of DmPsGEF determines the presence or absence of the RhoGEF domain in the protein (Figures 1A and 1B). The activation of Rac by PsGEF is therefore directly regulated by alternative splicing. What are the functions of the short version of PsGEF with only the C2 and PDZ domains, which is also present in Daphnia? If both short and long PsGEFs are present in a single neuron, the short protein may exert dominant negative effects on the long protein. The short and long proteins may compete for binding with Ca2+ and certain proteins through the C2 and PDZ domains, respectively. This, in turn, regulates the RhoGEF activity of the long PsGEF. If their expression is mutually exclusive, they may have independent functions in different neurons. Since it is difficult to distinguish the expression patterns of short and long DmPsGEF mRNAs in Drosophila, an examination of the functions of short PsGEF in Daphnia may provide an answer to the abovementioned question. Although alternative splicing of PsGEF occurs in the fruit fly and honey bee (data not shown), it remains to be established whether the same alternative splicing occurs in other insects and limpets.
Loss of DmPsGEF results in thinner alpha lobes than those of wild-type (Figures 6 and 7). Furthermore, short and multiple alpha lobes derived from late-born 201Y-Gal4-expressing alpha/beta neurons were observed in MBs of dmPsGEF Δ21 flies, as shown in Figures 6C to 6E. These results suggest that the alpha/beta neurons bifurcate their axons at more random positions in dmPsGEF Δ21 flies. Further, the dmPsGEF Δ21 alpha/beta neurons may not respond well to the signals provided by guidance neurons (the pre-existing alpha/beta neurons). Moreover, some alpha/beta neurons fail to extend their alpha-axonal branches (Figures 6F to 6H). Meanwhile, gamma neurons appear to be normal. Alpha'/beta' neurons are generally born during the late third instar, and their axons (alpha'/beta' lobes) remain intact during metamorphosis . These lobes may serve as the guiding axons for the bifurcation of the axons of alpha/beta neurons. We therefore examined the alpha'/beta' lobes in dmPsGEF Δ21 flies by immunostaining with anti-Trio antibody . Their morphology was found to be normal, thus suggesting that DmPsGEF is specifically necessary for the axonal development of alpha/beta neurons in MBs.
To identify Rho family members activated by PsGEF, we first tested the genetic interaction of DmPsGEF with five Rho family members. The results indicated that DmPsGEF genetically interacts with Rac1 but not other family members (Figure 7). Consistent with this observation, the ectopic expression of the RhoGEF domain of DmPsGEF induces actin polymerization in the membrane of HeLa cells (Figure 8). These results thus suggest that PsGEF activates Rac but not Cdc42 or Rho in vivo. Intriguingly, DmPsGEF does not genetically interact with Pak, one of the downstream effectors of Rac (Figure 7I). Trio was shown to activate Rac and promote LIM kinase activity via Pak to induce axon growth inhibition . Thus, DmPsGEF induces Rac activation and may stimulate axon growth via a Pak-independent pathway along with Still life (Sif) [36, 37]. Three GEFs for Rac (Trio, Sif, and DmPsGEF) appear to function for the morphogenesis of MBs in Drosophila. Since each GEF protein has specific functional domains (for example, Spectrin repeats and SH3 domain in Trio, PH and PDZ domains in Sif) in addition to the RhoGEF domain, the mechanism to activate individual GEFs should be different. Specifically, the presence of the C2 domain in PsGEF suggests that the increase of intracellular Ca2+ level is essential for the localization of PsGEF at the plasma membrane where Rac proteins are anchored. The function of DmPsGEF is therefore dependent on the local increase of cytosolic Ca2+ level which occurs during the axonal development of alpha/beta neurons in MBs.
DmPsGEF is expressed not only in the MBs but also in the antennal and optic lobes in adult Drosophila brain. We analyzed the axonal projection patterns of several olfactory neurons into the antennal lobes in dmPsGEF Δ21 flies; however, no significant difference was observed relative to the patterns observed in the wild-type (data not shown). The glomerular structures of the antennal lobes visualized by immunostaining with anti-nc82 antibody were found to be normal (data not shown). Although we did not observe gross morphological defects in the antennal and optic lobes in dmPsGEF Δ21 flies, it is possible that there were subtle defects in these brain regions. No other proteins with C2 and PDZ domains are present besides DmPsGEF in Drosophila. However, other GEFs for Rac (Trio and Sif) could be partially redundant with DmPsGEF. This may explain the lack of phenotypes associated with the antennal lobes in dmPsGEF Δ21 flies. We are also testing the olfactory and visual behaviors of adult dmPsGEF Δ21 flies at present.
Association of PsGEF with structural and/or functional features common between insect and lophotrochozoan nervous systems
Recent studies have demonstrated that the expression profile and roles of genes patterning the nervous system in the embryos of vertebrates and annelids are quite similar . Since it is unlikely that this remarkable similarity arose from convergent evolution, they suggest that Urbilateria may have already had a quite complex CNS, which is also supported by comparative genomics [3, 10]. It is therefore not surprising that the origin of MBs could be traced back to the last common ancestor of protostomes, in which ancient MB-like structures might have played a role in multimodal sensory integration and even learning and memory. To prove a single origin of MBs, it will be necessary to demonstrate that the same gene sets (for example, ey, toy, and dac) act similarly for the development of MBs in insects and lophotrochozoans. The homologs of these genes are also present in the vertebrate genomes, and they function in the early development of nervous systems. As these genes encode transcription factors, they could function as a common 'genetic code' to specify the brain region, giving rise to MBs and its vertebrate equivalents. Then, as a next level, a different set of genes such as PsGEF is necessary to generate the specific structures of MBs, which are present in the brains of insects and lophotrochozoans but not vertebrates. In this regard, PsGEF is one of genes involved in generating the diversity of metazoan nervous systems.
The specific acquisition of PsGEF by the last common ancestor of protostomes followed by the retention or loss in specific animal species during evolution demonstrates that there are some structural and/or functional features common between insect and lophotrochozoan nervous systems (for example, MBs), which are absent in all deuterostomes and cnidarians. PsGEF is therefore one of genes associated with the diversity of metazoan nervous systems.
Screening of insect-specific genes highly expressed in the Drosophila central nervous system
The identification of insect-specific orthologous genes has been previously described . Drosophila genes were analyzed using FlyBase  in order to identify those in which GAL4 was inserted in their putative promoter regions. These GAL4 enhancer trap lines were individually crossed with UAS-mCD8::GFP; this was then followed by examination of green fluorescence protein (GFP) expression patterns in their progenies. We identified one line, namely, NP5114, which exhibits strong GFP expression in the embryonic and adult Drosophila CNS (Figure 4). In this line, GAL4 was inserted at a position 5' upstream of the first exon of DmPsGEF (CG14045) on the X chromosome (Figure 5). Other GAL4 lines in which GAL4 was inserted close to NP5114 (NP0264, NP1088, NP7169, NP3316, NP7265, NP3612, and NP3237) exhibit the same expression patterns, with variable intensities.
Identification of alternatively spliced DmPsGEF mRNAs
There is one DmPsGEF cDNA sequence deposited in an NCBI database (RE74757). This sequence corresponds to the short mRNA encoding DmPsGEF with the C2 and PDZ domains; this was confirmed by RT-PCR and rapid amplification of cDNA ends (3' RACE). To verify the presence of long mRNAs encoding DmPsGEF with the C2, PDZ, and RhoGEF domains, the corresponding full-length cDNA was isolated by RT-PCR and then sequenced. The obtained sequence is identical to the one predicted from the genomic sequence (CG14045), except that a 108-bp sequence is absent.
The amino acid sequences of TcPsGEF (GLEAN_01044), AmPsGEF (GB16089-PA), PhcPsGEF (PHUM010260-PA), and LgPsGEF (fgenesh2_pg.C_sca_68000085) were retrieved from Baylor , BeeBase , VectorBase , and JGI , respectively. The functional domains of each protein were analyzed by NCBI CD search, and the sequence alignment of five PsGEF proteins was done by MEGA4 . The genomic sequences of five PsGEF were also retrieved from above databases and FlyBase.
DmPsGEF deletion mutants were generated by the imprecise excision of NP5114. Approximately 300 w female revertants balanced with FM7 were individually crossed with FM7 males to establish the lines. The B + adult males were collected from each line, and their genomic DNA was analyzed by PCR with the following two primers, namely, 5'-CACGGGATCTGCAGTGCAGACAACTCTT-3' and 5'-CAATCGCAGCTGTCAGTTCGGGAGGTGC-3', to identify the deletion mutants. The genomic PCR yielded a 7.5-kb band from the wild-type; thus, lines yielding bands smaller than 7.5 kb were analyzed further. We identified two large deletion mutants, namely, dmPsGEF Δ55 and dmPsGEF Δ21 , and their breakpoints were determined by sequencing.
In order to visualize the alpha/beta lobes of MBs by GFP, y, w, dmPsGEF Δ21 ; 201Y-GAL4 females were crossed with UAS-mCD8::GFP males, and the resulting males were examined. To analyze the genetic interaction of DmPsGEF with Rac1, Rac2, Mtl, Rho1, and Pak, the y, w, dmPsGEF Δ21 females were crossed with y, w; rac1 J11 /CyO, y, w; rac2 Δ, y, w; mtl Δ/TM3, y, w; rho1 E3.10 /CyO, and y, w; pak 6 /TM3 males. The resulting males were then examined. To analyze the interaction of DmPsGEF with Cdc42, we crossed FM7/y, w, dmPsGEF Δ21 , cdc42 4 females with y, w, dmPsGEF Δ21 males, and then the resulting B + females were analyzed. More than 30 animals were analyzed for each case.
Single-cell MARCM clones (alpha/beta neurons) were generated by heat-shocking late-stage pupae of y, w, dmPsGEF Δ21 , FRT19A/w, hs-FLP, tub-GAL80, FRT19A; UAS-mCD8::GFP/+; OK107/+ at 37°C for 45 min . As the wild-type control, y, w, FRT19A chromosomes were used.
The embryos were immunostained with rabbit anti-GFP antibodies (1,000-fold dilution) and horseradish peroxidase-conjugated anti-rabbit IgG antibodies (300-fold dilution) by using 3,3'-diaminobenzidine and nickel chloride as previously described . The adult brains were dissected and fixed with 4% paraformaldehyde/PBS on ice for 3 h, permeabilized with phosphate-buffered saline (PBS) containing 0.5% TX-100 for 5 min, and then blocked with PBS containing 5% normal goat serum for 30 min. They were then immunostained with 1D4 (4-fold dilution), rabbit anti-GFP antibody (1,000-fold dilution), Rhodamine anti-mouse IgG (300-fold dilution), and FITC anti-rabbit IgG (300-fold dilution).
Reverse transcriptase-polymerase chain reaction
Total RNA was isolated from NP5114,dmPsGEF Δ55 , and dmPsGEF Δ21 embryos. Thereafter, cDNAs were synthesized by using a reverse transcriptase (ReverTra Ace, TOYOBO). PCR was carried out using the following primers: 5'-ATGACACGGATGCATCGCCACTCCAGTT-3' and 5'-TTAGACGAAGACACCTTTGCCTACCTCC-3' (for DmPsGEF short mRNA), 5'-ACCTTCAGCAAGGAGTCGATTGTGCCTG-3' and 5'-CTGCAGTTCGTTGATAACCGTGCTAAAG-3' (for DmPsGEF long mRNA), and 5'-TGAGCATGAGCGCCACCTCGGATATCTA-3' and 5'-TGAGACTGGCGGATCTAGATGACGTAGT-3' (for CG14047 mRNA). The resulting PCR products were sequenced to verify their identities.
Total RNA was isolated from frozen samples of Daphnia pulex, and the cDNAs were then synthesized as mentioned above. PCR was carried out using the following primers: 5'-ATCGGCTCGCTACCTGAAATCCAACAGC-3' and 5'-GTGACGCTTCCGCCTCCTGACGGTTTCT-3' (for SNAP_00018439 mRNA), 5'-ATGGCGGCCTCGTCTTCGGACCTTCAGG-3' and 5'-TCAAGTATCCTCGCAGCGTTCACCGAGT-3' (for SNAP_00018441 mRNA), and 5'-GGTATCATGTCCGTGCAGCTGCACAAGT-3' and 5'-CATCCATTTGACGGCGGATAAGGTCGAC-3' (for SNAP_00018442 mRNA). The resulting PCR products were sequenced to verify their identities.
Ectopic expression of RhoGEF domain of DmPsGEF in HeLa cells
A DNA fragment encoding the RhoGEF domain of DmPsGEF was PCR-amplified using DmPsGEF long cDNA as a template and the following primers: 5'-TTTTTGCGGCCGCATGAGCCGGCCGGCTACCGCATGCTCGG-3' and 5'-TTTTTTAAGCTTACCAATATCACTCAGCGGCACCAGGGTG-3'. The resulting PCR product was digested with NotI and HindIII and inserted at the sites of the pCMVTag5A vector (Stratagene) that were treated with the same restriction enzymes. The resulting expression construct was introduced into HeLa cells with Effectene transfection reagent (Qiagen). Two days after transfection, the cells were fixed with 4% paraformaldehyde/PBS at room temperature for 15 min; this was followed by permeabilization and blocking as done before. The transfected cells were detected by using rabbit anti-myc antibody (1,000-fold dilution) and Rhodamine anti-rabbit IgG (300-fold dilution), and the F-actin was stained using FITC-phalloidin.
We thank H Hing, RG Fehon, K Furukubo-Tokunaga, the Kyoto Drosophila Genetic Resource Center, and Bloomington Stock Center for the fly stocks. We are grateful to S Tochinai for providing us Daphnia pulex, and M Mizunami for discussion. We also thank C Hama and the Developmental Studies Hybridoma Bank for providing us the anti-Trio and monoclonal antibody 1D4, respectively. This study was supported by a Grant-in-Aid for Scientific Research from the Japan Society for the Promotion of Science to TK.
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