Table 1 Statistical support for the phylogenetic position of turtles based on the various reconstruction methods, substitution models, and data partitions.
| Â | Amino acids | Nucleotides | ||
|---|---|---|---|---|
| Â | All positions | All positions | Positions 1 + 2 | Positions 3 |
Total sites | 62,342 | 187,026 | 124,684 | 62,342 |
Constant sites | 41,170 (66.0%) | 99,638 (53.3%) | 92,128 (73.9%) | 7,510 (11.2%) |
Informative sites | 8,749 (14.0%) | 54,880 (29.3%) | 14,009 (11.2%) | 40,871 (65.6%) |
RaxML LG + G / GTR + G | Turtles + Archosaurs BPML = 100 | Turtles + Crocodiles BPML = 76 | Turtles + Archosaurs BPML = 100 | Turtles + Crocodiles BPML = 100 |
RaxML GTR + G partitioned by gene | Turtles + Archosaurs BPPARTG = 100 | Turtles + Crocodiles BPPARTG = 54 | - | - |
RaxML GTR + G partitioned by codon | - | Turtles + Archosaurs BPPARTC = 100 | - | - |
MrBayes WAG + G / GTR + G | Turtles + Archosaurs PPBAY = 1.0 | Turtles + Crocodiles PPBAY = 1.0 | Turtles + Archosaurs PPBAY = 1.0 | Turtles + Crocodiles PPBAY = 1.0 |
MrBayes GTR + G partitioned by codon | - | Turtles + Archosaurs PPPARTC = 1.0 | - | - |
PhyloBayes CAT-GTR + G | Turtles + Archosaurs PPCAT = 1.0 | Turtles + Archosaurs PPCAT = 1.0 | Turtles + Archosaurs PPCAT = 1.0 | Turtles + Archosaurs PPCAT = 1.0 |