Table 5 Evaluation of homology modeling templates
Evaluation method | Criteria | Points |
|---|---|---|
Sequence identity for BLAST, RPS-BLAST and HHSearch | 20% to 40% | 1 |
| Â | 40% to 60% | 2 |
| Â | 60% to 80% | 3 |
| Â | 80% to 90% | 4 |
| Â | 90% to100% | 5 |
HHsearch probability | 80% to 85% | 1 |
| Â | 85% to 90% | 2 |
| Â | 90% to 99% | 3 |
| Â | 99% to 99.99% | 4 |
| Â | 99.99% to 100% | 5 |
BLAST and RPS-BLAST e-value | 1e-6 to 1e-2 | 1 |
| Â | 1e-6 to 1e-18 | 2 |
| Â | 1e-18 to 1e-54 | 3 |
| Â | < 1e-54 | 4 |
Consensus bonus | Predicted by two methods | 1 |
| Â | Predicted by three methods | 2 |