Table 5 Evaluation of homology modeling templates
| Evaluation method | Criteria | Points |
|---|---|---|
| Sequence identity for BLAST, RPS-BLAST and HHSearch | 20% to 40% | 1 |
| 40% to 60% | 2 | |
| 60% to 80% | 3 | |
| 80% to 90% | 4 | |
| 90% to100% | 5 | |
| HHsearch probability | 80% to 85% | 1 |
| 85% to 90% | 2 | |
| 90% to 99% | 3 | |
| 99% to 99.99% | 4 | |
| 99.99% to 100% | 5 | |
| BLAST and RPS-BLAST e-value | 1e-6 to 1e-2 | 1 |
| 1e-6 to 1e-18 | 2 | |
| 1e-18 to 1e-54 | 3 | |
| < 1e-54 | 4 | |
| Consensus bonus | Predicted by two methods | 1 |
| Predicted by three methods | 2 |