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Table 5 Evaluation of homology modeling templates

From: MESSA: MEta-Server for protein Sequence Analysis

Evaluation method Criteria Points
Sequence identity for BLAST, RPS-BLAST and HHSearch 20% to 40% 1
  40% to 60% 2
  60% to 80% 3
  80% to 90% 4
  90% to100% 5
HHsearch probability 80% to 85% 1
  85% to 90% 2
  90% to 99% 3
  99% to 99.99% 4
  99.99% to 100% 5
BLAST and RPS-BLAST e-value 1e-6 to 1e-2 1
  1e-6 to 1e-18 2
  1e-18 to 1e-54 3
  < 1e-54 4
Consensus bonus Predicted by two methods 1
  Predicted by three methods 2
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