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Table 3 Genes associated with the oxidative phosphorylation pathway present in clusters 27 and 99.

From: A gene expression atlas of the domestic pig

Functional Grouping Cluster 27 Cluster 99
TCA cycle ACO2, CS, FH, IDH2, IDH3B, MDH2, SUCLG1  
Oxidative phoshorylation, Complex I NDUFA1, NDUFA10, NDUFA12, NDUFA8, NDUFA9, NDUFAB1, NDUFB1, NDUFB2, NDUFB3, NDUFB5, NDUFB6, NDUFB8, NDUFB9, NDUFC1, NDUFC2, NDUFS1, NDUFS2, NDUFS6, NDUFV2, NDUFV3 MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5,
Oxidative phoshorylation, Complex II SDHA, SDHB  
Oxidative phoshorylation, Complex III CYC1, UQCR10, UQCRB, UQCRC1, UQCRFS1, UQCRH MT-CYB
Oxidative phoshorylation, Complex IV COX4I1, COX5B, COX6B, COX6C, COX7B2 MT-CO1, MT-CO2, MT-CO3
Oxidative phoshorylation, Complex V ATP5A1, ATP5C1, ATP5F1, ATP5G1, ATP5G3, ATP5J2, ATP5H MT-ATP6
Cytochrome C biosynthesis HCCS  
Fatty acid (long chain) beta-oxidation ACADVL, GOT2, HADHA, HADHB, PTGES2  
Mitochondrial membrane transport CHCHD3, NNT, SAMM50, TIMM8B, TOMM7, TUFM, VDAC1  
Mitochondrial RNA processing SLIRP, MRPL2, MRPS24  
Ubiquinone biosynthesis COQ6, COQ7, COQ9  
Apoptosis-associated AIFM1, DELE  
Ox phos-related BOLA3, BRP44, CHCHD10, GBAS  
Unknown function C11orf67, C6H4orf52, IMMT, LOC100060661, LOC100512781, LOC100520866, LOC100523804, SS18L2, WDR45 Gm8437, LOC100512762, LRP1B, MTRNR2L4
  1. Coexpression of members of oxidative phosphorylation and related pathways. Nuclear (cluster 27) and mitochondrial (cluster 99) gene clusters associated with oxidative phosphorylation. The known association with pathway/protein complex is listed for each gene in the cluster. List of all genes present in clusters 27 and 99 and the function of the encoded protein, where known.