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Table 1 Transcriptome analysis of an IpsA deletion mutant

From: IpsA, a novel LacI-type regulator, is required for inositol-derived lipid formation in Corynebacteria and Mycobacteria

Locus tag

Gene

Annotated function

Ratio

cg3323

ino1

Myo-inositol phosphate synthase

0.047

cg0044

rbsB

ABC transporter/periplasmic d-ribose-binding protein

0.082

cg0045

-

Probable ABC transport protein, membrane component

0.138

cg2910

-

Transcriptional regulator, LacI family

0.173

cg3195

-

Flavin-containing monooxygenase

0.178

cg0046

-

Probable ABC transport protein, ATP-binding component

0.323

cg3210

-

Cell envelope-related transcriptional regulator

0.411

cg1421

-

Putative dinucleotide-binding enzyme

5.214

cg0533

menE

O-succinylbenzoic acid-CoA ligase

5.467

cg0534

-

Putative integral membrane protein

5.597

  1. mRNA ratios (ΔipsA/wild-type) of IpsA target genes in microarray experiments are shown. Presented are all genes where binding of IpsA could be shown in electrophoretic mobility shift assays (EMSAs) as well as IpsA itself, confirming the deletion.