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Table 3 TCRα and β chain repertoires ot a Th17 polarized T cell line

From: Elongated TCR alpha chain CDR3 favors an altered CD4 cytokine profile

  

CDR3 region

 

CDR3 length

%

TCR alpha

EDSGTYFC

AAANTNTGKLT

FGDG

11

44

EDSGTYFC

AAEDNNNNAPR

FGAG

11

16

EDSGTYFC

AAMNYNQGKLI

FGQG

11

6

EDSGTYFC

AAVDYNQGKLI

FGQG

11

4

TDSGTYLC

AMDMNNNNAPR

FGAG

11

4

EDSGTYFC

AAEAPSSGQKLV

FGQG

12

4

GDSAVYFC

AVSVDNYAQGLT

FGLG

12

4

EDSGTYFC

AAMNTNTGKLT

FGDG

11

2

EDSGTYFC

AANNYNQGKLI

FGQG

11

2

EDSGTYFC

AAEGNSGTYQR

FGTG

11

2

EDSGTYFC

AAEDSGGNYKPT

FGKG

12

2

EDSGTYFC

AAYNYAQGLT

FGLG

10

2

EDSGTYFC

AAEADTNAYKVI

FGKG

12

2

EDSGTYFC

AAGPHNNNAPR

FGAG

11

2

TDSGTYLC

AMER6TNTGKIJT

FGDG

12

2

SDSAVTPC

AARSDTNAYKVI

FGKG

12

2

TCR beta

EDSAVYLC

ASSSTGGAHYAEQF

FGPG

14

8

QDSAVYLC

ASSLVGQGDTQY

FGPG

12

6

DDSATYFC

ASSQDQISQNTLY

FGAG

13

6

DDSATYFC

ASSQDLGTSNERLF

FGHG

14

6

SQTSVYFC

ASGDSAGGNSPLY

FAAG

13

4

SQTSVYFC

ASAWGENTLY

FGAG

10

4

ODSAVYLC

ASSLDTGYTEVF

FGKG

12

2

QDSAVYLC

ASSLGQGTEVF

FGKG

11

2

QDSAVYLC

ASSLAPGQGDERLF

FGHG

14

2

QDSAVYLC

ASSLDQTNERLF

FGHG

12

2

ODSAVYLC

ASSLAGANTGQLY

FGEG

13

2

QDSAVYLC

ASSLDAGQNYAEQF

FGPG

14

2

QDSAVYLC

ASSPPDTYEQY

FGPG

11

2

ODSAVYLC

ASSPQGYQDTQY

FGPG

12

2

ODSAVYLC

ASSLDWGEGNTLGL

FGAG

14

2

SQTSVYPC

ASGDGTGGRDE0P

FGPG

13

2

SQTSVYFC

ASG6GTASNERLF

FGHG

13

2

S0TSVYFC

ASGETANTEV

FGKG

10

2

SQTSVYPC

ASSDAGTGRDTEVF

FGKG

14

2

SQTSVYFC

ASSDAAGGFIAEQF

FGPG

14

2

SQTSVYFC

ASSDAGVTGQLY

FGEG

12

2

SQTSVYFC

ASSDGQNTLY

FGAG

10

2

SQTSVYFC

AGSGDWGDEQY

FGPG

11

2

SQTSVYFC

ASSAGQQDTQY

FGPG

11

2

SQTSVYFC

ASSDAGTGRDTEVF

FGKG

14

2

SQTSVYFC

ASSDEGTKPDTEVF

FGKG

14

2

SQTSVYFC

ASSDDRVNERLF

FGHG

12

2

SQTSVYFC

ASSPSGTGSYEQY

FGPG

13

2

SQTSVYFC

ASSDDRVNERLF

FGHG

12

2

DDSATYFC

ASSQEGTGGDEQY

FGPG

13

2

DDSATYPC

ASSQEKGQGYAEQF

FGPG

14

2

NQTSVYFC

ASSSPFNSYNSPLY

FAAG

14

2

NQTSVYFC

ASSLRTGGGGTEVF

FGKG

14

2

SHSGFYLC

AWSHNRGNSDYT

FGSG

12

2

EYSAMYLC

ASSGPSTGRDTEVF

FGKG

14

2

EYSAMYLC

ASSRGDWGNEQY

FGPG

12

2

NEMAVFLC

ASSMGTYAEQF

FGPG

11

2

EDSAVYLC

ASSSLGGRNYAEQF

FGPG

14

2

EDSAVYLC

ASSLGLGAETLY

FGSG

12

2

  1. The most dominant TCR alpha sequence is shown in bold.
  2. Mean CDR3α length 11.14 ± 0.06 (SE) (n = 50).
  3. Mean CDR3β length 12.70 ± 0.18 (SE) (n = 50).