Skip to main content

Table 2 Number of identified DE genes

From: RNA-seq: impact of RNA degradation on transcript quantification

  GLM: reads approximate time point  
Time point GLM GLM + RIN Regress RIN, GLM
0 h versus 12 h 608 5 26
0 h versus 24 h 3,704 5 203
0 h versus 48 h 8,756 47 5
0 h versus 84 h 9,998 42 0
  GLM: reads approximate individual b  
Individuals GLM GLM + RIN Regress RIN, GLM
Ind 1 versus Ind 3 69 553 268
Ind 1 versus Ind 4 48 401 190
Ind 3 versus Ind 4 100 573 299
  1. b, Treating time as technical replicates; DE, Differentially expressed; GLM, generalized linear model; H, hours; RIN, RNA integrity number.