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Table 3 DE genes across pairs of individuals and overlap with top 10% most variable genes at 0 hours

From: RNA-seq: impact of RNA degradation on transcript quantification

  GLM individual GLM, individual + RIN Regress RIN, GLM individual
Test Number DE genes % overlap Number DE genes % overlap Number DE genes % overlap
Ind 1 vs Ind 3 69 86.96% 553 45.39% 268 75.00%
Ind 1 vs Ind 4 48 89.58% 401 50.12% 190 78.95%
Ind 3 vs Ind 4 100 87.00% 573 49.21% 299 73.91%
All individuals 160 85.00% 1053 42.64% 521 71.98%
  1. DE, Differentially expressed; GLM, generalized linear model; RIN, RNA integrity number.
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