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Table 2 Primer sequences for ribonuclease protection assay probes and quantitative PCR

From: Expression of PEG11 and PEG11AS transcripts in normal and callipyge sheep

   

Sizea

Tm

Locationb

Primer

Sequence

bp

°C

 

PEG11/PEG11AS

   

C

F

AGGAACACCGCTGTGGAGGTAGAA

135

59

4337

 

R

ACAGCAGAGGCAGCCAAGCA

   

E

F

GGTGACGCCCGTCTGCAAGT

180

61

2427

 

R

GTGGAACGGTTCGCCGACAT

   

Pc

F

ACAGCTCAACAGTGGAGGTCATG

199

55

996

 

R

ATCAGCTGGCAGAGCACGATGAAC

   

F

F

TTCCCCCATGGCTGTGAGAAAT

175

58

-390

 

R

CCTCTGTGACCTTCTGGTGACCAA

   

G

F

AGGCTGAATTGACAGAGATGT

124

49

-1193

 

R

GTTAAATGGCTCAAGAACGA

   

DLK1

F

CCCGTCCTCTTGCTCCTGCT

116

58

 
 

R

GGCTGGCACCTGCACACACT

   

MEG8

F

CCCAGGGAGTGTGAGGCTCTTCT

100

56

 
 

R

GGACCCACGGCTGACCTGTT

   

G3PD

F

TGAGTGTCGCTGTTGAAGT

150

58

 
 

R

CCTGCCAAGTATGATGAGAT

   
  1. aSize of the PCR product and protected fragment for RPA bLocation for the PCR product is relative to the first base of the PEG11 open reading frame. cCharlier et al. [3]