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Table 1 Log-likelihood differences based on the concatenated alignment

From: Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

    P-values   
Topology   Δ ln L i ± σ i KH AU BPP BP
a ((((tp,lu),(((tl,(ga,bo)),st),bi)),ca),out) (A, A) ML 0.59 0.88 0.89 0.44
b ((((tp,(((tl,(ga,bo)),st),bi)),lu),ca),out) (A, A) 2.08 ± 9.55 0.41 0.74 0.11 0.33
c (((tp,(lu,(((tl,(ga,bo)),st),bi))),ca),out) (A, A) 9.88 ± 7.57 0.10 0.14 0.00 0.02
d ((((tp,lu),((((tl,bo),ga),st),bi)),ca),out) (A, B) 16.6 ± 11.6 0.08 0.19 0.00 0.04
e ((((tp,lu),ca),(((tl,(ga,bo)),st),bi)),out) (-, A) 18.3 ± 13.1 0.09 0.21 0.00 0.03
f ((((tp,((((tl,bo),ga),st),bi)),lu),ca),out) (A, B) 18.6 ± 15.0 0.11 0.14 0.00 0.03
g (((tp,((((tl,(ga,bo)),st),bi),ca)),lu),out) (-, A) 22.0 ± 10.7 0.07 0.20 0.00 0.03
h (((tp,(lu,ca)),(((tl,(ga,bo)),st),bi)),out) (-, A) 22.3 ± 15.7 0.08 0.20 0.00 0.02
i ((((tp,(((tl,(ga,bo)),st),bi)),ca),lu),out) (-, A) 22.6 ± 15.8 0.08 0.11 0.00 0.01
j ((((tp,((((tl,ga),bo),st),bi)),lu),ca),out) (A, C) 24.0 ± 14.4 0.05 0.05 0.00 0.00
k ((((tp,ca),lu),(((tl,(ga,bo)),st),bi)),out) (-, A) 24.1 ± 15.5 0.06 0.14 0.00 0.01
l (((tp,(((tl,(ga,bo)),st),bi)),(lu,ca)),out) (-, A) 25.7 ± 15.4 0.05 0.04 0.00 0.00
  1. Topologies that are not significantly rejected (P-value > 0.05) by the Kishino-Hasegawa (KH) test are listed. P-values by the approximately unbiased (AU) test, the Bayesian posterior probability (BPP), and the bootstrap probability (BP) are also shown for each topology. Abbreviations for species names are: tp, tetrapods; lu, lunfishes; tl, teleost fishes; bo, bowfin; ga, gar; st, sturgeon; bi, bichir; ca, cartilaginous fishes; out, outgroup. Corresponding hypotheses in Figures 1 and 2 are also shown; (A, B) at topology d, for example, indicates that topology d corresponds to Figure 1A and Figure 2B.
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