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Table 2 Log-likelihood differences based on totalml analysis

From: Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

   Inference from each protein   P-values   
Topology   ALDa ALDb ALDc G6PD GAG PGK TPI Δ ln L i ± σ i KH AU BPP BP
b ((((tp,(((tl,(ga,bo)),st),bi)),lu),ca),out) (A, A) 0.2 1.6 1.3 1.0 1.0 1.6 1.0 ML 0.67 0.93 0.99 0.45
a ((((tp,lu),(((tl,(ga,bo)),st),bi)),ca),out) (A, A) 1.0 1.4 1.3 0.7 0.5 1.7 1.1 5.30 ± 12.2 0.33 0.76 0.01 0.23
c (((tp,(lu,(((tl,(ga,bo)),st),bi))),ca),out) (A, A) 1.0 1.7 1.3 0.6 1.2 1.7 1.2 13.5 ± 11.0 0.11 0.28 0.00 0.03
f ((((tp,((((tl,bo),ga),st),bi)),lu),ca),out) (A, B) 0.2 2.0 1.2 1.3 1.1 1.7 1.0 15.3 ± 12.7 0.12 0.24 0.00 0.05
j ((((tp,((((tl,ga),bo),st),bi)),lu),ca),out) (A, C) 0.4 1.8 1.3 1.6 1.1 1.7 0.8 17.1 ± 12.3 0.08 0.21 0.00 0.04
i ((((tp,(((tl,(ga,bo)),st),bi)),ca),lu),out) (-, A) 0.6 2.2 1.4 1.1 1.3 1.7 1.2 19.9 ± 13.1 0.07 0.20 0.00 0.03
d ((((tp,lu),((((tl,bo),ga),st),bi)),ca),out) (A, B) 0.8 1.7 1.2 1.1 0.6 1.8 1.0 20.2 ± 17.6 0.12 0.29 0.00 0.03
m ((((tp,lu),((((tl,ga),bo),st),bi)),ca),out) (A, C) 1.1 1.6 1.3 1.4 0.6 1.8 0.9 21.8 ± 16.9 0.10 0.20 0.00 0.02
e ((((tp,lu),ca),(((tl,(ga,bo)),st),bi)),out) (-, A) 1.4 1.7 1.3 0.6 0.0 1.9 1.6 26.7 ± 19.1 0.08 0.23 0.00 0.01
g (((tp,((((tl,(ga,bo)),st),bi),ca)),lu),out) (-, A) 1.4 2.2 1.2 0.9 1.1 1.6 1.0 27.1 ± 18.3 0.07 0.31 0.00 0.02
n (((tp,(lu,((((tl,ga),bo),st),bi))),ca),out) (A, C) 1.1 1.9 1.3 1.4 1.3 1.8 1.1 30.4 ± 16.0 0.06 0.12 0.00 0.01
  1. Topologies that are not significantly rejected (P-value > 0.05) by the Kishino-Hasegawa (KH) test are listed. P-values by the approximately unbiased (AU) test, the Bayesian posterior probability (BPP), and the bootstrap probability (BP) are also shown for each topology. The Δ ln L i ± σ i values are shown for each protein. Abbreviations for species names are: tp, tetrapods; lu, lunfishes; tl, teleost fishes; bo, bowfin; ga, gar; st, sturgeon; bi, bichir; ca, cartilaginous fishes; out, outgroup. Corresponding hypotheses in Figure 1 and 2 are also shown; (A, B) at topology d, for example, indicates that topology d corresponds to Figure 1A and Figure 2B.
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