Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

Table 5 Sequence data used for the present analysis

Species	ALDa	ALDb	ALDc	G6PD	GAG	PGK	TPI
Human	M11560	D00183	X05196	L44140	X54199	M11968	BC007812
Mouse	Y00516	BC016435	BC008184	AF326207	U20892	M15668	AC002397
Axolotl	AB111374	AB111375	AB111376	AB111377	AB111378	AB111379	AB111380
South American lungfish	AB111367	AB111368	AB111369	AB111370	AB111371	AB111372	AB111373
African lungfish	AB111360	AB111361	AB111362	AB111363	AB111364	AB111365	AB111366
Japanese medaka	AB111381	AB111382	AB111383	AB111384	AB111385	AB111386	AB111387
Fugu	SINFRUP00000071519	SINFRUP00000065997	SINFRUP00000087275	SINFRUP00000085765	SINFRUP00000132027	SINFRUP00000056545	SINFRUP00000055457
Longnose gar	AB111388	AB111389	AB111390	AB111391	AB111392	AB111393	AB111394
Bowfin	AB111395	AB111396	AB111397	AB111398	AB111399	AB111400	AB111401
Sturgeon	AB111402	AB111404	AB111405	AB111406	AB111407	AB111408	AB111409
Bichir	AB111410	AB111411	AB111412	AB111413	AB111414	AB111415	AB111416
Swell shark	AB111417	AB111418	AB111419	AB111420	AB111421	AB111422	AB111423
Freshwater stingray	AB111424	AB111425	AB111426	AB111427	AB111428	AB111429	AB111430
Plownose chimaera	AB111431	-	AB111432	AB111433	AB111434	AB111435	AB111436
Cyclostome	AB0253241	AB0253251	D386192	AB1114373	AB1114391	AB1114383	AB0253273
Lancelet	AB005035	AB005035	AB005035	AB111440	AB111441	AB111442	AB000892

DDBJ/EMBL/GenBank accession numbers of sequences used in the present analysis are shown, except for fugu sequences, for which Ensembl transcript IDs are shown. Abbreviation for each protein name: ALDa, fructose-bisphosphate aldolase A; ALDb, fructose-bisphosphate aldolase B; ALDc, fructose-bisphosphate aldolase C; G6PD, glucose-6-phosphate 1-dehydrogenase; GAG, a trifunctional protein with glycinamide ribonucleotide synthetase (GARS)-aminoimidazole ribonucleotide synthetase (AIRS)-glycinamide ribonucleotide formyltransferase (GART); PGK, phosphoglycerate kinase; TPI, triosephosphate isomerase. Taxonomic name for each species: Axolotl, Ambystoma mexicanum; South-American lungfish, Lepidosiren paradoxa; African lungfish, Protopterus annectens; Japanese medaka, Oryzias latipes; Fugu, Takifugu rubripes; Longnose gar, Lepisosteus osseus; Bowfin, Amia calva; Sturgeon, Acipenser baerii; Bichir, Polypterus ornatipinnis Swell shark, Cephaloscyllium umbratile; Freshwater stingray, Potamotrygon motoro; Plownose chimaera, Callorhinchus callorhynchus; Cyclostome, 1 Eptatretus burgeri, 2 Lethenteron japonicum, 3 Lethenteron reissneri (a hagfish sequence was used instead of lamprey sequence because of their monophyletic relationship [13, 25, 54]); Lancelet, Branchiostoma belcheri.

ISSN: 1741-7007