Skip to main content

Table 5 Sequence data used for the present analysis

From: Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

Species ALDa ALDb ALDc G6PD GAG PGK TPI
Human M11560 D00183 X05196 L44140 X54199 M11968 BC007812
Mouse Y00516 BC016435 BC008184 AF326207 U20892 M15668 AC002397
Axolotl AB111374 AB111375 AB111376 AB111377 AB111378 AB111379 AB111380
South American lungfish AB111367 AB111368 AB111369 AB111370 AB111371 AB111372 AB111373
African lungfish AB111360 AB111361 AB111362 AB111363 AB111364 AB111365 AB111366
Japanese medaka AB111381 AB111382 AB111383 AB111384 AB111385 AB111386 AB111387
Fugu SINFRUP00000071519 SINFRUP00000065997 SINFRUP00000087275 SINFRUP00000085765 SINFRUP00000132027 SINFRUP00000056545 SINFRUP00000055457
Longnose gar AB111388 AB111389 AB111390 AB111391 AB111392 AB111393 AB111394
Bowfin AB111395 AB111396 AB111397 AB111398 AB111399 AB111400 AB111401
Sturgeon AB111402 AB111404 AB111405 AB111406 AB111407 AB111408 AB111409
Bichir AB111410 AB111411 AB111412 AB111413 AB111414 AB111415 AB111416
Swell shark AB111417 AB111418 AB111419 AB111420 AB111421 AB111422 AB111423
Freshwater stingray AB111424 AB111425 AB111426 AB111427 AB111428 AB111429 AB111430
Plownose chimaera AB111431 - AB111432 AB111433 AB111434 AB111435 AB111436
Cyclostome AB0253241 AB0253251 D386192 AB1114373 AB1114391 AB1114383 AB0253273
Lancelet AB005035 AB005035 AB005035 AB111440 AB111441 AB111442 AB000892
  1. DDBJ/EMBL/GenBank accession numbers of sequences used in the present analysis are shown, except for fugu sequences, for which Ensembl transcript IDs are shown. Abbreviation for each protein name: ALDa, fructose-bisphosphate aldolase A; ALDb, fructose-bisphosphate aldolase B; ALDc, fructose-bisphosphate aldolase C; G6PD, glucose-6-phosphate 1-dehydrogenase; GAG, a trifunctional protein with glycinamide ribonucleotide synthetase (GARS)-aminoimidazole ribonucleotide synthetase (AIRS)-glycinamide ribonucleotide formyltransferase (GART); PGK, phosphoglycerate kinase; TPI, triosephosphate isomerase. Taxonomic name for each species: Axolotl, Ambystoma mexicanum; South-American lungfish, Lepidosiren paradoxa; African lungfish, Protopterus annectens; Japanese medaka, Oryzias latipes; Fugu, Takifugu rubripes; Longnose gar, Lepisosteus osseus; Bowfin, Amia calva; Sturgeon, Acipenser baerii; Bichir, Polypterus ornatipinnis Swell shark, Cephaloscyllium umbratile; Freshwater stingray, Potamotrygon motoro; Plownose chimaera, Callorhinchus callorhynchus; Cyclostome, 1 Eptatretus burgeri, 2 Lethenteron japonicum, 3 Lethenteron reissneri (a hagfish sequence was used instead of lamprey sequence because of their monophyletic relationship [13, 25, 54]); Lancelet, Branchiostoma belcheri.
\