Table 2 Key to organism acronyms
From: The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context
Organism | Abbreviation in Paper | Abbreviation on websiteb |
|---|---|---|
Acidithiobacillus ferrooxidans ATCC 23270 | Aferr | Â |
Acinetobacter sp. ADP1 | ACIN | Â |
Actinobacillus actinomycetemcomitans HK1651 | Aact | Â |
Actinomyces naeslundii MG1 | Anae | Â |
Actinoplanes teichomyceticus | Atei | Â |
Agrobacterium tumefaciens strain C58 | Atum | Â |
Amycolatopsis balhimycina | Abal | Â |
Amycolatopsis orientalis | Aori | Â |
Anabaena sp. PCC 7120 | ANAB | Â |
Arabidopsis thaliana | Atha | Â |
Archaeoglobus fulgidus DSM 4304 | Aful | Aful_1 |
Azotobacter vinelandii | Avin | Avin_1 |
Bacillis anthracis str. A2012 | Bant | Â |
Bacillus cereus ATCC 14579 | Bcer | Â |
Bacillus halodurans C-125 | Bhal | Bhal_2 |
Bacillus stearothermophilus | Bste | Â |
Bacillis subtilis | Bsub | Â |
Bacillus thuringiensis israelensis | Bthu | Â |
Bifidobacterium longum NCC2705 | Blon | Blon_1 |
Blochmannia floridanus | Bflo | Â |
Bordetella bronchisepticus | Bbro | Â |
Burkholderia cepacia J2315 | Bcep | Â |
Burkholderia fungorum LB400 | Bfun | Â |
Burkholderia mallei ATCC 23344 | Bmal | Â |
Burkholderia pseudomallei K96243 | Bpse | Bpse_6 |
Campylobacter jejuni | Cjej | Â |
Chromobacterium violaceum ATCC 12472 | Cvio | Â |
Corynebacterium diphtheriae NCTC 13129 | Cdip | Â |
Corynebacterium efficiens YS-314 | Ceff | Â |
Corynebacterium glutamicum ATCC 13032 | Cglu | Cglu_1 |
Desulfovibrio desulfuricans G20 | Ddes | Â |
Desulfovibrio vulgaris subsp. vulgaris strain Hildenborough | Dvul | Â |
Desulfuromonas acetoxidans | Dace | Dace_5 |
Enterococcus faecalis V583 | Efae_2 | Â |
Enterococcus faecium | Efae_1 | Efae_1 |
Erwinia carotovoa subsp.atroseptica SCRI1043 | Ecar | Â |
Escherichia coli K12 | Ecol | Â |
Geobacter metallireducens GS-15 | Gmet | Â |
Geobacter sulfurreducens PCA | Gsul | Â |
Gloeobacter violaceus PCC 7421 | Gvio | Â |
Haemophilus influenzae Rd KW20 | Hinf | Â |
Helicobacter hepaticus ATCC 51449 | Hhep | Â |
Helicobacter pylori 26695 | Hpyl | Â |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | Kpne | Â |
Leifsonia xyli subsp. Xyli strain CTCB07 | Lxyl | Â |
Listeria innocua Clip 11262 | Linn | Â |
Listeria monocytogenes EGD-e | Lmon | Â |
Lotus corniculatus var. japonicus | Lcor | Lcor_3 |
Lycopersicon esculentum | Lesc | Â |
Methanococcus jannaschii | Mjan | Â |
Methanopyrus kandleri AV19 | Mkan | Mkan_1 |
Methanosarcina barkeri strain Fusaro | Mbar | Â |
Methanothermobacter thermoautotrophicus strain Delta H | Mthe | Mthe_7 |
Microbulbifer degradans 2–40 | Mdeg |  |
Mycobacterium avium subsp. paratuberculosis strain k10 | Mavi | Â |
Mycobacterium bovis TrEMBL | Mbov | Mbov_2 |
Mycobacterium leprae TN | Mlep | Â |
Mycobacterium tuberculosis CDC1551 | Mtub | Â |
Myxococcus xanthus DK 1622 | Mxan | Â |
Neisseria gonorrhoeae FA 1090 | Ngon | Â |
Nitrosomonas europaea ATCC 19718 | Neur | Â |
Nocardia farcinica IFM 10152 | Nfar | Â |
Nonomuraea sp. | NONO | Â |
Nostoc punctiforme PCC73102 | Npun | Npun_1 |
Novosphingomonas aromaticivorans DSM 12444 | Naro | Â |
Oceanobacillus iheyensis THE831 | Oihe | Â |
Oryza sativa ssp. japonica | Osat | Â |
Pantoea agglomerans | Pagg | Â |
Pasteurella multocida subsp. multocida strain Pm70 | Pmul | Â |
Photorhabdus luminescens subsp. laumondii TT01 | Plum | Â |
Prochlorococcus marinus subsp. pastoris strain CCMP1378 | Pmar_1 | Pmar_3 |
Prochlorococcus marinus MIT9313 | Pmar_2 | Pmar_10 |
Propionibacterium acnes KPA171202 | Pacn | Â |
Pseudomonas aeruginosa PAO1 | Paer | Paer_1 |
Pseudomonas fluorescens PfO-1 | Pflu | Â |
Pseudomonas putida KT2440 | Pput | Â |
Pseudomonas stutzeri | Pstu | Â |
Ralstonia eutropha JMP134 | Reut | Â |
Ralstonia solanacearum GMI1000 | Rsol | Â |
Rhodobacter capsulatus | Rcap | Â |
Rhodobacter sphaeroides 2.4.1 | Rsph | Â |
Rhodopseudomonas palustris CGA009 | Rpal | Â |
Rhodospirillum rubrum | Rrub | Rrub_1 |
Rubrobacter xylanophilus DSM 9941 | Rxyl | Â |
Saccharomyces cerevisiae | Scer | Â |
Salmonella typhimurium LT2 | Styp | Styp_1 |
Schizosaccharomyces pombe | Spom | Â |
Shewanella oneidensis MR-1 | Sone | Â |
Shewanella putrifacians | Spu | Â |
Staphylococcus aureus subsp. Aureus MW2 | Saur | Saur_2 |
Streptococcus gordonii str. Challis | Sgor | Â |
Streptococcus pneumoniae R6 | Spne | Â |
Streptomyces avermitilis MA-4680 | Save | Â |
Streptomyces caeruleus | Scae | Scae_2 |
Streptomyces coelicolor A3(2) | Scoe | Scoe_1 |
Streptomyces lavendulae | Slav | Â |
Streptomyces pristinaespiralis | Spri | Â |
Streptomyces roseochromogenes subsp. Oscitans | Sros | Sros_1 |
Streptomyces toyocaensis strain 7 | Stoy | Â |
Sulfolobus solfataricus P2 | Ssol | Â |
Sulfolobus tokodaii strain 7 | Stok | Â |
Synechococcus sp. WH8102 | SYNE_1 | SYNE_1 |
Synechococcus sp. PCC7002 | SYNE_2 | Â |
Synechocystis sp. PCC6803 | SYNE_3 | SYNE_3 |
Thermobifida fusca | Tfus | Â |
Thermosynechococcus elongates BP-1 | Telo | Â |
Trichodesmium erythraeum IMS101 | Tery | Â |
Tropheryma whipplei TW08/27 | Twhi | Â |
Vibrio cholerae O1 biovar eltor strain N16961 | Vcho | Â |
Vibrio parahaemolyticus RIMD 2210633 | Vpar | Â |
Wolinella succinogenes DSM 1740 | Wsu | Â |
Xanthomonas campestris pv. campestris strain ATCC 33913 | Xcam | Â |
Xylella fastidiosa 9a5c | Xfas | Â |
Yersinia enterocolitica (type 0:8) | Yent | Â |
Zymomonas mobilis subsp. mobilis ZM4 | Zmob | Â |