Table 1 Overview of the codon models used in the analyses.
From: Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
Model | NP | Parameters |
|---|---|---|
Lineage specific models | ||
M0: One Ratio | 5 | κ, τpig, τhuman, τmouse, ω |
M1a: Free Ratio | 7 | κ, τpig, τhuman, τmouse, ωpig, ωhuman, ωmouse |
Site specific models | ||
M1b: Neutral | 6 | κ, τpig, τhuman, τmouse, p 0 (p 0 + p 1 = 1), ω[0;1[ |
Branch-Site specific models | ||
M2a: Model A | 8 | κ, τpig, τhuman, τmouse, p 0(p 0 + p 1 = 1), p 2, ω[0;1[, ωforeground |