Table 2 Predominant Pfam domains within the chromosome 11 predicted rice proteome. All non-TE related proteins were searched using the Hmmpfam program and Pfam domains above the trusted cutoff were parsed out. Only the top 20 Pfam domains are listed.
Pfam accession | Numbers of matched proteins | Pfam common name |
|---|---|---|
PF00560 | 166 | Leucine Rich Repeat |
PF00069 | 106 | Protein kinase domain |
PF00931 | 102 | NB-ARC domain |
PF00646 | 78 | F-box domain |
PF00023 | 32 | Ankyrin repeat |
PF00097 | 29 | Zinc finger, C3HC4 type (RING finger) |
PF01535 | 23 | PPR repeat |
PF00098 | 21 | Zinc knuckle |
PF05699 | 19 | hAT family dimerisation domain |
PF06654 | 19 | Protein of unknown function (DUF1165) |
PF07197 | 19 | Protein of unknown function (DUF1409) |
PF04578 | 14 | Protein of unknown function, DUF594 |
PF00036 | 13 | EF hand |
PF00076 | 13 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
PF03018 | 13 | Dirigent-like protein |
PF00067 | 12 | Cytochrome P450 |
PF00400 | 12 | WD domain, G-beta repeat |
PF00651 | 12 | BTB/POZ domain |
PF00704 | 12 | glycosyl hydrolase, family 18 |
PF00106 | 11 | oxidoreductase, short chain dehydrogenase/reductase family |