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Table 1 Global statistics

From: The transcriptome of Toxoplasma gondii

SAGE Tag Datasets

Total

10 × Gen. Match

No Gen. Match

Annotated Seq.

EST Match

SAGE tag counts: ALL

290,062

262,029

[90.3%]

28,033

[9.7%]

128,519

[44.3%]

207,625

[71.6%]

Unique SAGE tag counts: ALL

38,263

24,932

[65.2%]

13,331

[34.8%]

5,910

[15.4%]

8,709

[22.8%]

AVG FREQ SAGE tag counts: ALL

7.6

10.5

 

2.1

 

21.7

 

23.8

 

SAGE tag counts: 2 × 2

202,472

    

102,619

[50.7%]

163,283

[80.6%]

Unique SAGE tag counts: 2 × 2

8,188

    

2,038

[24.9%]

3,560

[43.5%]

AVG FREQ SAGE tag counts: 2 × 2

24.7

    

50.4

 

45.8

 
  1. 10 × Gen. = 10 × coverage of the genome sequence for reference strain Me49B7