Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

Table 1 PEP-CTERM/EpsH system genes identified in completed genomes

Species	PEP-CTERM TIGR02595	EpsH TIGR02602	EpsI TIGR02914	PrsK TIGR2916	PrsR TIGR2915	PrsT TIGR02917
Verrucomicrobium spinosum DSM 4136	65	ORF00124 ORF01727	-	-	-	-
Nostoc sp. PCC 7120^a	42	all0497	-	-	-	-
Nitrospira multiformis ATCC 25196^a	39	Nmul_A0246 Nmul_A2521	Nmul_A2521	Nmul_A2672	Nmul_A2671	Nmul_A0376
Anabaena variabilis ATCC 29413^a	36	Ava_2911	-	-	-	-
Hahella chejuensis KCTC 2396^a	27	HCH_02741 HCH_03425	HCH_03424	HCH_02749	HCH_02748	HCH_02747
Thiobacillus denitrificans ATCC 25259^a	21	Tbd_0290 Tbd_1792	Tbd_0290	Tbd_0198	Tbd_0197	Tbd_0195 Tbd_0196
Colwellia psychrerythraea 34H	19	CPS_4990	-	CPS_5031	CPS_5030	CPS_0309 CPS_0310 CPS_0528 CPS_0781
Dechloromonas aromatica RCB^a	16	Daro_2406	Daro_2406	Daro_2437	Daro_2438	Daro_1943 Daro_2439
Rhodopirellula baltica SH 1^a	12	RB2461	-	-	-	-
Geobacter metallireduscens GS-15	10	Gmet_1503 Gmet_2003	Gmet_1503 Gmet_2002	Gmet_1993	Gmet_1992	Gmet_2032
Nitrosomonas europaea ATCC 19718^a	8	NE1797	NE1797	NE0377	NE1124	NE1444
Nitrosococcus oceani ATCC 19707^a	6	Noc_1778	Noc_1778	Noc_1998	Noc_1997	Noc_1987
Geobacter sulfurreducens PCA^a	5	GSU1979	GSU1978	GSU1941	GSU1940	GSU1987
Desulfovibrio vulgaris Hildenborough ^a	5	DVU_A0055	DVU_A0056	DVU_A0065	DVU_A0057	DVU_A0036
Desulfovibrio desulfuricans G20	5	Dde_0847	Dde_0848	Dde_0849	Dde_0850	Dde_0828
Azoarcus sp. EbN1^a	4	ebA4261	ebA4261	ebA38	ebA37	ebA36
Rhodospirillum rubrum ATCC 11170	1*	Rru_A3120	Rru_A3120	Rru_A3103	Rru_A3104	Rru_A3097
Chlorobium tepidum TLS	2*	-	-	-	-	-

^a Data from these genomes was used in the phylogenetic profiling studies that identified EpsH.

ISSN: 1741-7007