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Table 2 Representative results from the partial phylogenetic profiling analysis of the predicted proteins of Nitrosomonas europaea ATCC 19718. The PEP-CTERM profile consisted of 12 positive (YES, 1) and 190 negative (NO, 0) species.

From: Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

BLAST E-value Top hit locus Hit genome PEP-CTERM Profile partial profile score -log(P)
Best hit: NE1797 – EpsH
2.1 e-142 Nmul_A2521 Nitrospira multiformis 1 |||| 1.2
1.6 e-112 Tbd_0290 Thiobacillus denitrificans 1 |||||| 2.4
3.0 e-102 Noc_1978 Nitrosococcus oceani 1 ||||||||| 3.7
9.2 e-92 Daro_2406 Dechloromonas aromatica 1 |||||||||||| 4.9
2.7 e-78 ebA4261 Azoarcus sp. EbN1 1 ||||||||||||||| 6.1
1.1 e-38 HCH_02741 Hahella chejuensis 1 |||||||||||||||||| 7.4
2.3 e-33 GSU_1979 Geobacter sulfurreducens 1 ||||||||||||||||||||| 8.6
2.7 e-24 DVU_A0055 Desulfovibrio vulgaris 1 |||||||||||||||||||||||| 9.8
1.7 e-06 all5246 Nostoc sp. PCC 7120 1 ||||||||||||||||||||||||||| 11.0
2.9 e-06 Ava_2911 Anabaena variabilis 1 ||||||||||||||||||||||||||||||| 12.3
1.3 e-03 RB2461 Rhodopirellula baltica 1 |||||||||||||||||||||||||||||||||| 13.5
1.9 e-02 PSHAb0228 Pseuroalteromonas haloplanktis 0 ||||||||||||||||||||||||||||||| 12.4
3.1 e-02 Plut_1390 Pelodictyon luteolum 0 ||||||||||||||||||||||||||||| 11.6
8.0 e-02 AF_1831 Archaeoglobus fulgidus 0 ||||||||||||||||||||||||||| 11.0
15th best hit: NE2015 – possible CapK protein
3.3 e-80 Daro_2411 Dechloromonas aromatica 1 |||| 1.2
1.3 e-76 Noc_1971 Nitrosococcus oceani 1 |||||| 2.4
1.9 e-75 Nmul_A0291 Nitrospira multiformis 1 ||||||||| 3.7
2.4 e-54 ebA4317 Azoarcus sp. EbN1 1 |||||||||||| 4.9
8.4 e-43 Tbd_0295 Thiobacillus denitrificans 1 ||||||||||||||| 6.1
1.0 e-28 MA1063 Methanosarcina acetivorans 0 |||||||||||||| 5.4
4.2 e-26 GSU1950 Geobacter sulfurreducens 1 |||||||||||||||| 6.5
2.0 e-20 NT02CA1188 Chloroflexus aurantiacus 0 ||||||||||||||| 6.0
9.2 e-18 cbdbA894 Dehalococcoides sp. CBDB1 0 |||||||||||||| 5.5
1.3 e-16 VC0924 Vibrio cholerae El Tor 0 ||||||||||||| 5.1
1.4 e-16 DVU_3253 Desulfovibrio vulgaris 1 |||||||||||||||| 6.2
5.1 e-16 lpl1943 Legionella pneumophila 0 |||||||||||||| 5.8
2.5 e-15 DET_0940 Dehalococcoides ethenogenes 0 |||||||||||||| 5.5
2.5 e-15 PSPTO_2429 Pseudomonas syringae 0 ||||||||||||| 5.2
34th best hit: NE1609 – type II secretion system protein E
7.9e-221 Nmul_A2588 Nitrospira multiformis 1 |||| 1.2
2.5 e-170 Tbd_1295 Thiobacillus denitrificans 1 |||||| 2.4
2.0 e-160 Pfl_1982 Pseudomonas fluorescens 0 ||||| 2.0
6.1 e-159 PP3483 Pseudomonas putida 0 |||| 1.7
5.4 e-158 Daro_3223 Dechloromonas aromatica 1 ||||||| 2.7
7.4 e-154 ebA1226 Azoarcus sp. EbN1 1 |||||||||| 3.8
4.3 e-149 RSp0148 Ralstonia solanacearum 0 |||||||| 3.4
3.1 e-132 GSU1783 Geobacter sulfurreducens 1 ||||||||||| 4.4
9.6 e-129 Pcar_0131 Pelobacter carbinoicus 0 |||||||||| 4.1
1.2 e-91 HCH_03937 Hahella chejuensis 1 ||||||||||||| 5.1
1.1 e-90 TTE1262 Thermoanaerobacter tengcongensis 0 |||||||||||| 4.8
1.1 e-88 SO0167 Shewanella oneidensis 0 ||||||||||| 4.5
1.4 e-88 Moth_1554 Moorella thermoacetica 0 ||||||||||| 4.3