TY - JOUR AU - Bremer, K. PY - 1985 DA - 1985// TI - Summary of green plant phylogeny and classification JO - Cladistics VL - 1 UR - https://doi.org/10.1111/j.1096-0031.1985.tb00434.x DO - 10.1111/j.1096-0031.1985.tb00434.x ID - Bremer1985 ER - TY - JOUR AU - Sluiman, H. J. PY - 1989 DA - 1989// TI - The green algal class Ulvophyceae. An ultrastructural survey and classification JO - Crypt Bot VL - 1 ID - Sluiman1989 ER - TY - JOUR AU - Lewis, L. A. AU - McCourt, R. M. PY - 2004 DA - 2004// TI - Green algae and the origin of land plants JO - Am J Bot VL - 91 UR - https://doi.org/10.3732/ajb.91.10.1535 DO - 10.3732/ajb.91.10.1535 ID - Lewis2004 ER - TY - JOUR AU - Friedl, T. AU - O'Kelly, C. J. PY - 2002 DA - 2002// TI - Phylogenetic relationships of green algae assigned to the genus Planophila(Chlorophyta): evidence from 18S rDNA sequence data and ultrastructure JO - Eur J Phycol VL - 37 UR - https://doi.org/10.1017/S0967026202003712 DO - 10.1017/S0967026202003712 ID - Friedl2002 ER - TY - JOUR AU - Pombert, J. F. AU - Otis, C. AU - Lemieux, C. AU - Turmel, M. PY - 2004 DA - 2004// TI - The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum(Ulvophyceae) highlights distinctive evolutionary trends in the Chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae JO - Mol Biol Evol VL - 21 UR - https://doi.org/10.1093/molbev/msh099 DO - 10.1093/molbev/msh099 ID - Pombert2004 ER - TY - JOUR AU - Pombert, J. F. AU - Otis, C. AU - Lemieux, C. AU - Turmel, M. PY - 2005 DA - 2005// TI - The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum(Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi182 DO - 10.1093/molbev/msi182 ID - Pombert2005 ER - TY - JOUR AU - Lemieux, C. AU - Otis, C. AU - Turmel, M. PY - 2000 DA - 2000// TI - Ancestral chloroplast genome in Mesostigma viridereveals an early branch of green plant evolution JO - Nature VL - 403 UR - https://doi.org/10.1038/35001059 DO - 10.1038/35001059 ID - Lemieux2000 ER - TY - JOUR AU - Turmel, M. AU - Ehara, M. AU - Otis, C. AU - Lemieux, C. PY - 2002 DA - 2002// TI - Phylogenetic relationships among Streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences JO - J Phycol VL - 38 UR - https://doi.org/10.1046/j.1529-8817.2002.01163.x DO - 10.1046/j.1529-8817.2002.01163.x ID - Turmel2002 ER - TY - JOUR AU - Turmel, M. AU - Otis, C. AU - Lemieux, C. PY - 2002 DA - 2002// TI - The complete mitochondrial DNA sequence of Mesostigma virideidentifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003979 DO - 10.1093/oxfordjournals.molbev.a003979 ID - Turmel2002 ER - TY - JOUR AU - Bhattacharya, D. AU - Weber, K. AU - An, S. S. AU - Berning-Koch, W. PY - 1998 DA - 1998// TI - Actin phylogeny identifies Mesostigma virideas a flagellate ancestor of the land plants JO - J Mol Evol VL - 47 UR - https://doi.org/10.1007/PL00006410 DO - 10.1007/PL00006410 ID - Bhattacharya1998 ER - TY - JOUR AU - Marin, B. AU - Melkonian, M. PY - 1999 DA - 1999// TI - Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons JO - Protist VL - 150 UR - https://doi.org/10.1016/S1434-4610(99)70041-6 DO - 10.1016/S1434-4610(99)70041-6 ID - Marin1999 ER - TY - JOUR AU - Karol, K. G. AU - McCourt, R. M. AU - Cimino, M. T. AU - Delwiche, C. F. PY - 2001 DA - 2001// TI - The closest living relatives of land plants JO - Science VL - 294 UR - https://doi.org/10.1126/science.1065156 DO - 10.1126/science.1065156 ID - Karol2001 ER - TY - JOUR AU - Turmel, M. AU - Otis, C. AU - Lemieux, C. PY - 2002 DA - 2002// TI - The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.162203299 DO - 10.1073/pnas.162203299 ID - Turmel2002 ER - TY - JOUR AU - Turmel, M. AU - Otis, C. AU - Lemieux, C. PY - 1999 DA - 1999// TI - The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.18.10248 DO - 10.1073/pnas.96.18.10248 ID - Turmel1999 ER - TY - CHAP AU - Palmer, J. D. ED - Bogorad, L. ED - Vasil, I. PY - 1991 DA - 1991// TI - Plastid chromosomes: structure and evolution BT - The Molecular Biology of Plastids Cell Culture and Somatic Cell Genetics of Plants PB - Academic Press CY - San Diego ID - Palmer1991 ER - TY - JOUR AU - Goulding, S. E. AU - Olmstead, R. G. AU - Morden, C. W. AU - Wolfe, K. H. PY - 1996 DA - 1996// TI - Ebb and flow of the chloroplast inverted repeat JO - Mol Gen Genet VL - 252 UR - https://doi.org/10.1007/BF02173220 DO - 10.1007/BF02173220 ID - Goulding1996 ER - TY - JOUR AU - Wakasugi, T. AU - Nagai, T. AU - Kapoor, M. AU - Sugita, M. AU - Ito, M. AU - Ito, S. AU - Tsudzuki, J. AU - Nakashima, K. AU - Tsudzuki, T. AU - Suzuki, Y. AU - Hamada, A. AU - Ohta, T. AU - Inamura, A. AU - Yoshinaga, K. AU - Sugiura, M. PY - 1997 DA - 1997// TI - Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.11.5967 DO - 10.1073/pnas.94.11.5967 ID - Wakasugi1997 ER - TY - JOUR AU - Maul, J. E. AU - Lilly, J. W. AU - Cui, L. AU - dePamphilis, C. W. AU - Miller, W. AU - Harris, E. H. AU - Stern, D. B. PY - 2002 DA - 2002// TI - The Chlamydomonas reinhardtiiplastid chromosome: islands of genes in a sea of repeats JO - Plant Cell VL - 14 UR - https://doi.org/10.1105/tpc.006155 DO - 10.1105/tpc.006155 ID - Maul2002 ER - TY - JOUR AU - Chihara, M. AU - Inouye, I. AU - Takahata, N. PY - 1986 DA - 1986// TI - Oltmannsiellopsis, a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae) JO - Arch Protistenkd VL - 132 UR - https://doi.org/10.1016/S0003-9365(86)80026-4 DO - 10.1016/S0003-9365(86)80026-4 ID - Chihara1986 ER - TY - JOUR AU - Lokhorst, G. M. AU - Star, W. PY - 1993 DA - 1993// TI - The flagellar apparatus in the marine flagellate algal genus Oltmannsiellopsis(Dunaliellales, Chlorophyceae) JO - Arch Protistenkd VL - 143 UR - https://doi.org/10.1016/S0003-9365(11)80268-X DO - 10.1016/S0003-9365(11)80268-X ID - Lokhorst1993 ER - TY - JOUR AU - Hargraves, P. E. AU - Steele, R. L. PY - 1980 DA - 1980// TI - Morphology and ecology of Oltmannsiella virida, sp. nov. (Chlorophyceae: Volvocales) JO - Phycologia VL - 19 UR - https://doi.org/10.2216/i0031-8884-19-2-96.1 DO - 10.2216/i0031-8884-19-2-96.1 ID - Hargraves1980 ER - TY - JOUR AU - Nakayama, T. AU - Watanabe, S. AU - Inouye, I. PY - 1996 DA - 1996// TI - Phylogeny of wall-less green flagellates inferred from 18S rDNA sequence data JO - Phycological Research VL - 44 UR - https://doi.org/10.1111/j.1440-1835.1996.tb00044.x DO - 10.1111/j.1440-1835.1996.tb00044.x ID - Nakayama1996 ER - TY - JOUR AU - O'Kelly, C. J. AU - Wysor, B. AU - Bellows, W. K. PY - 2004 DA - 2004// TI - Gene sequence diversity and the phylogenetic position of algae assigned to the genera Phaeophila and Ochlochaete(Ulvophyceae, Chlorophyta) JO - J Phycol VL - 40 UR - https://doi.org/10.1111/j.1529-8817.2004.03204.x DO - 10.1111/j.1529-8817.2004.03204.x ID - O'Kelly2004 ER - TY - JOUR AU - O'Kelly, C. J. AU - Wysor, B. AU - Bellows, W. K. PY - 2004 DA - 2004// TI - Collinsiella(Ulvophyceae, Chlorophyta) and other ulotrichalean taxa with shell-boring sporophytes form a monophyletic clade JO - Phycologia VL - 43 UR - https://doi.org/10.2216/i0031-8884-43-1-41.1 DO - 10.2216/i0031-8884-43-1-41.1 ID - O'Kelly2004 ER - TY - JOUR AU - O'Kelly, C. J. AU - Bellows, W. K. AU - Wysor, B. PY - 2004 DA - 2004// TI - Phylogenetic position of Bolbocoleon piliferum(Ulvophyceae, Chlorophyta): Evidence from reproduction, zoospore and gamete ultrastructure, and small subunit rRNA gene sequences JO - J Phycol VL - 40 UR - https://doi.org/10.1046/j.1529-8817.2004.03104.x DO - 10.1046/j.1529-8817.2004.03104.x ID - O'Kelly2004 ER - TY - JOUR AU - Yamada, T. AU - Shimaji, M. PY - 1987 DA - 1987// TI - Splitting of the ribosomal RNA operon on chloroplast DNA from Chlorella ellipsoidea JO - Mol Gen Genet VL - 208 UR - https://doi.org/10.1007/BF00328127 DO - 10.1007/BF00328127 ID - Yamada1987 ER - TY - JOUR AU - Manhart, J. R. AU - Kelly, K. AU - Dudock, B. S. AU - Palmer, J. D. PY - 1989 DA - 1989// TI - Unusual characteristics of Codium fragilechloroplast DNA revealed by physical and gene mapping JO - Mol Gen Genet VL - 216 UR - https://doi.org/10.1007/BF00334385 DO - 10.1007/BF00334385 ID - Manhart1989 ER - TY - JOUR AU - Boudreau, E. AU - Turmel, M. PY - 1995 DA - 1995// TI - Gene rearrangements in Chlamydomonaschloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat JO - Plant Mol Biol VL - 27 UR - https://doi.org/10.1007/BF00020189 DO - 10.1007/BF00020189 ID - Boudreau1995 ER - TY - JOUR AU - Boudreau, E. AU - Turmel, M. PY - 1996 DA - 1996// TI - Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonasspecies featuring multiple dispersed repeats JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025560 DO - 10.1093/oxfordjournals.molbev.a025560 ID - Boudreau1996 ER - TY - JOUR AU - Cosner, M. E. AU - Raubeson, L. A. AU - Jansen, R. K. PY - 2004 DA - 2004// TI - Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes JO - BMC Evol Biol VL - 4 UR - https://doi.org/10.1186/1471-2148-4-27 DO - 10.1186/1471-2148-4-27 ID - Cosner2004 ER - TY - JOUR AU - Milligan, B. G. AU - Hampton, J. N. AU - Palmer, J. D. PY - 1989 DA - 1989// TI - Dispersed repeats and structural reorganization in subclover chloroplast DNA JO - Mol Biol Evol VL - 6 ID - Milligan1989 ER - TY - JOUR AU - Keller, M. D. AU - Selvin, R. C. AU - Claus, W. AU - Guillard, R. R. L. PY - 1987 DA - 1987// TI - Media for the culture of oceanic ultraphytoplankton JO - J Phycol VL - 23 UR - https://doi.org/10.1111/j.1529-8817.1987.tb04217.x DO - 10.1111/j.1529-8817.1987.tb04217.x ID - Keller1987 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - O'Brien, E. A. AU - Badidi, E. AU - Barbasiewicz, A. AU - deSousa, C. AU - Lang, B. F. AU - Burger, G. PY - 2003 DA - 2003// TI - GOBASE – a database of mitochondrial and chloroplast information JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg090 DO - 10.1093/nar/gkg090 ID - O'Brien2003 ER - TY - JOUR AU - Schwartz, S. AU - Zhang, Z. AU - Frazer, K. A. AU - Smit, A. AU - Riemer, C. AU - Bouck, J. AU - Gibbs, R. AU - Hardison, R. AU - Miller, W. PY - 2000 DA - 2000// TI - PipMaker – a web server for aligning two genomic DNA sequences JO - Genome Res VL - 10 UR - https://doi.org/10.1101/gr.10.4.577 DO - 10.1101/gr.10.4.577 ID - Schwartz2000 ER - TY - JOUR AU - Kurtz, S. AU - Choudhuri, J. V. AU - Ohlebusch, E. AU - Schleiermacher, C. AU - Stoye, J. AU - Giegerich, R. PY - 2001 DA - 2001// TI - REPuter: the manifold applications of repeat analysis on a genomic scale JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.22.4633 DO - 10.1093/nar/29.22.4633 ID - Kurtz2001 ER - TY - JOUR AU - Volfovsky, N. AU - Haas, B. J. AU - Salzberg, S. L. PY - 2001 DA - 2001// TI - A clustering method for repeat analysis in DNA sequences JO - Genome Biol VL - 2 UR - https://doi.org/10.1186/gb-2001-2-8-research0027 DO - 10.1186/gb-2001-2-8-research0027 ID - Volfovsky2001 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucl Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - JOUR AU - Rice, P. AU - Longden, I. AU - Bleasby, A. PY - 2000 DA - 2000// TI - EMBOSS: the European Molecular Biology Open Software Suite JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02024-2 DO - 10.1016/S0168-9525(00)02024-2 ID - Rice2000 ER - TY - STD TI - The GNU Image Manipulation Program. [http://www.gimp.org] UR - http://www.gimp.org ID - ref40 ER - TY - STD TI - The Vmatch large scale analysis software. [http://www.vmatch.de] UR - http://www.vmatch.de ID - ref41 ER - TY - JOUR AU - Choudhuri, J. V. AU - Schleiermacher, C. AU - Kurtz, S. AU - Giegerich, R. PY - 2004 DA - 2004// TI - GenAlyzer: interactive visualization of sequence similarities between entire genomes JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth161 DO - 10.1093/bioinformatics/bth161 ID - Choudhuri2004 ER - TY - JOUR AU - Tesler, G. PY - 2002 DA - 2002// TI - GRIMM: genome rearrangements web server JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.3.492 DO - 10.1093/bioinformatics/18.3.492 ID - Tesler2002 ER - TY - JOUR AU - Michel, F. AU - Westhof, E. PY - 1990 DA - 1990// TI - Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis JO - J Mol Biol VL - 216 UR - https://doi.org/10.1016/0022-2836(90)90386-Z DO - 10.1016/0022-2836(90)90386-Z ID - Michel1990 ER -