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Figure 2 | BMC Biology

Figure 2

From: Ab initio modeling of small proteins by iterative TASSER simulations

Figure 2

Examples of I-TASSER models from three independent benchmark sets. The green color is for I-TASSER models and blue for the native structures. (A–C) are from benchmark I (Bradley et al [13]); (D–F) are from benchmark II (Zhang et al [12]); and (G–I) are from benchmark III, selected directly from the PDB library. Column 1 contains the high-resolution models with a Cα-RMSD ≤ 1.5Å; column 2 contains the medium-resolution models with a Cα-RMSD of 1.5–5Å; column 3 contains the low-resolution models with a Cα-RMSD > 5Å. The Cα-RMSD value for the examples are: (A) 1ogwA_ (1.1Å), (B) 1di2A_ (2.3Å), (C) 1dcjA_(10.0Å), (D) 1cy5A (1.5Å), (E) 1pgx (3.1Å), (F) 1gnuA (8.2Å), (G) 1cqkA (1.5Å), (H) 1gyvA (3.3Å), (I) 1no5A(10.5Å). The pictures were generated using PyMOL software [45].

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