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Table 3 Summary of I-TASSER modeling on the Benchmark III

From: Ab initio modeling of small proteins by iterative TASSER simulations

    Cα-RMSD (Å) (TM-score) of I-TASSER models
Protein name Length (residues) Secondary structure First cluster Best in top five clusters
1ne3A 56 β 4.6 (0.45) 4.6 (0.48)
2cr7A 60 α 4.5 (0.48) 2.6 (0.66)
2f3nA 65 α 1.8 (0.74) 1.8 (0.74)
1itpA 68 αβ 10.9 (0.33) 4.5 (0.40)
1kviA 68 αβ 2.0 (0.72) 2.0 (0.72)
1b4bA 71 αβ 6.4 (0.48) 5.6 (0.54)
1gjxA 77 β 6.9 (0.44) 5.6 (0.47)
1of9A 77 α 3.6 (0.53) 3.6 (0.53)
1mn8A 84 α 7.0 (0.35) 7.0 (0.35)
1fo5A 85 αβ 3.8 (0.54) 3.8 (0.54)
1ten_ 87 β 1.6 (0.85) 1.6 (0.85)
1fadA 92 α 3.6 (0.59) 3.6 (0.59)
1no5A 93 αβ 10.6 (0.43) 10.5 (0.45)
1g1cA 98 β 2.5 (0.79) 2.5 (0.79)
1cqkA 101 β 1.5 (0.88) 1.5 (0.88)
1abv_ 103 α 13.0 (0.28) 6.8 (0.40)
1jnuA 104 αβ 2.7 (0.75) 2.7 (0.75)
1egxA 115 αβ 2.3 (0.80) 2.3 (0.83)
1gyvA 117 β 3.3 (0.78) 3.3 (0.78)
1orgA 118 α 2.4(0.78) 2.4(0.78)
Average 87   4.8 (0.60) 3.9 (0.63)