Comparative analysis of structured RNAs in S. cerevisiaeindicates a multitude of different functions

Table 3 Transcription factor (TF)-binding sites overlapping with RNA structures

Binding site	CBF1	DIG1	MBP1	MCM1	REB1	SWI6
Total number of instances in genome	123	134	138	64	176	133
Number of instances covered by RNAz hits	22	17	32	28	10	35

Comparison of number of TF-binding sites of the six transcription factors CBF1 (cell cycle, stress response), DIG1 (Down-regulator of Invasive Growth), MBP1 (cell cycle), MCM1 (stress response), REB1 (cell cycle), SWI6 (cell cycle) overlapping with a predicted RNA structure with total number of TF-binding sites of these transcription factors. TF-binding site data were taken from [18].

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