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Table 4 Arabidopsis loci with conserved peptide uORFs identified from Arabidopsis-Arabidopsis comparison

From: Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

Homology group Locus Gene name mORF description Gene ontology molecular function Recent duplicate
20 At3g53670.1   Expressed transcript Unknown At2g37480a
20 At2g37480.1   Expressed transcript Unknown At3g53670a
21 At1g68550.1 AtERF#118 b Group VI-L ERF/AP2 transcription factor Transcription factor At1g25470
21 At1g25470.1 AtERF#116 b Group VI-L ERF/AP2 transcription factor Transcription factor At1g68550
22 At1g16860.1   Expressed transcript Unknown At1g78880
22 At1g78880.1   Expressed transcript Unknown At1g16860
23 At1g64630.1 ZIK10 MAP kinase, PPC Family 4.1.5 Transcription factor Not found
23 At5g41990.1 WNK8/ZIK6 MAP kinase, PPC family 4.1.5 Protein kinase Not found
24 At3g22970.1   Expressed transcript Unknown At4g14620
24 At4g14620.1   Expressed transcript Unknown At3g22970
25 At3g45240.1c   Calcium response kinase, PPC family 4.2.7 ATP binding, protein kinase At5g60550
25 At5g60550.1   Calcium response kinase, PPC family 4.2.7 ATP binding, protein kinase At3g45240
26 At3g10910.1   Zinc finger, C3HC4-type (RING finger) Protein binding, zinc ion binding At5g05280
26 At5g05280.1   Zinc finger, C3HC4-type (RING finger) Protein binding, zinc ion binding At3g10910
  1. ERF/AP2, Ethylene Response Factor/Apetela 2 transcription factor; PPC, PlantsP protein kinase classification.
  2. aBlanc and Wolfe (2004) report that At2g3790 and At3g53670 are retained recent duplicates, but the At2g3790 locus has since been replaced by At2g3780.
  3. bAs defined by Nakano, et al [97] and previously characterized as part of subfamily B-6 by Sakuma, et al [100].
  4. cuORF found upstream of annotated mORF-containing locus (within 2 kb).