TY - JOUR AU - Sarafian, S. K. AU - Knapp, J. S. PY - 1989 DA - 1989// TI - Molecular epidemiology of gonorrhea JO - Clin Microbiol Revs VL - 2 ID - Sarafian1989 ER - TY - JOUR AU - O'Rourke, M. AU - Stevens, E. PY - 1993 DA - 1993// TI - Genetic structure of Neisseria gonorrhoeaepopulations: a non-clonal pathogen JO - J Gen Microbiol VL - 139 UR - https://doi.org/10.1099/00221287-139-11-2603 DO - 10.1099/00221287-139-11-2603 ID - O'Rourke1993 ER - TY - JOUR AU - Cooke, S. J. AU - de la Paz, H. AU - La Poh, C. AU - Ison, C. A. AU - Heckels, J. E. PY - 1997 DA - 1997// TI - Variation within serovars of Neisseria gonorrhoeaedetected by structural analysis of outer-membrane protein PIB and by pulsed-field gel electrophoresis JO - Microbiology VL - 143 UR - https://doi.org/10.1099/00221287-143-4-1415 DO - 10.1099/00221287-143-4-1415 ID - Cooke1997 ER - TY - JOUR AU - Ng, L. K. AU - Dillon, J. R. PY - 1993 DA - 1993// TI - Typing by serovar, antibiogram, plasmid content, riboprobing, and isoenzyme typing to determine whether Neisseria gonorrhoeaeisolates requiring proline, citrulline, and uracil for growth are clonal JO - J Clin Microbiol VL - 31 ID - Ng1993 ER - TY - JOUR AU - O'Rourke, M. AU - Ison, C. A. AU - Renton, A. M. AU - Spratt, B. G. PY - 1995 DA - 1995// TI - Opa-typing: a high resolution tool for studying the epidemiology of gonorrhoea JO - Mol Microbiol VL - 17 UR - https://doi.org/10.1111/j.1365-2958.1995.mmi_17050865.x DO - 10.1111/j.1365-2958.1995.mmi_17050865.x ID - O'Rourke1995 ER - TY - JOUR AU - Thompson, D. K. AU - Deal, C. D. AU - Ison, C. A. AU - Zenilman, J. M. AU - Bash, M. C. PY - 2000 DA - 2000// TI - A typing system for Neisseria gonorrhoeaebased on biotinylated oligonucleotide probes to PIB gene variable regions JO - J Infect Dis VL - 181 UR - https://doi.org/10.1086/315464 DO - 10.1086/315464 ID - Thompson2000 ER - TY - JOUR AU - Gutjahr, T. S. AU - O'Rourke, M. AU - Ison, C. A. AU - Spratt, B. G. PY - 1997 DA - 1997// TI - Arginine-, hypoxanthine-, uracil-requiring isolates of Neisseria gonorrhoeaeare a clonal lineage within a non-clonal population JO - Microbiology VL - 143 UR - https://doi.org/10.1099/00221287-143-2-633 DO - 10.1099/00221287-143-2-633 ID - Gutjahr1997 ER - TY - JOUR AU - Knapp, J. S. AU - Holmes, K. K. PY - 1975 DA - 1975// TI - Disseminated gonococcal infections caused by Neisseria gonorrhoeaewith unique nutritional requirements JO - J Infect Dis VL - 132 UR - https://doi.org/10.1093/infdis/132.2.204 DO - 10.1093/infdis/132.2.204 ID - Knapp1975 ER - TY - JOUR AU - Eisenstein, B. I. AU - Lee, T. J. AU - Sparling, P. F. PY - 1977 DA - 1977// TI - Penicillin sensitivity and serum resistance are independent attributes of strains of Neisseria gonorrhoeaecausing disseminated gonococcal infection JO - Infect Immun VL - 15 ID - Eisenstein1977 ER - TY - JOUR AU - Hobbs, M. M. AU - Alcorn, T. M. AU - Davis, R. H. AU - Fischer, W. AU - Thomas, J. C. AU - Martin, I. AU - Ison, C. AU - Sparling, P. F. AU - Cohen, M. S. PY - 1999 DA - 1999// TI - Molecular typing of Neisseria gonorrhoeaecausing repeated infections: evolution of porin during passage within a community JO - J Infect Dis VL - 179 UR - https://doi.org/10.1086/314608 DO - 10.1086/314608 ID - Hobbs1999 ER - TY - JOUR AU - Posada, D. AU - Crandall, K. A. AU - Nguyen, M. AU - Demma, J. C. AU - Viscidi, R. P. PY - 2000 DA - 2000// TI - Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026322 DO - 10.1093/oxfordjournals.molbev.a026322 ID - Posada2000 ER - TY - JOUR AU - Unemo, M. AU - Olcen, P. AU - Albert, J. AU - Fredlund, H. PY - 2003 DA - 2003// TI - Comparison of serologic and genetic porB-based typing of Neisseria gonorrhoeae: consequences for future characterization JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.9.4141-4147.2003 DO - 10.1128/JCM.41.9.4141-4147.2003 ID - Unemo2003 ER - TY - JOUR AU - Viscidi, R. P. AU - Demma, J. C. PY - 2003 DA - 2003// TI - Genetic diversity of Neisseria gonorrhoeaehousekeeping genes JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.1.197-204.2003 DO - 10.1128/JCM.41.1.197-204.2003 ID - Viscidi2003 ER - TY - STD TI - Neisseria gonorrhoeae Multi Antigen Sequence Typing Database. [http://www.ng-mast.net/] UR - http://www.ng-mast.net/ ID - ref14 ER - TY - JOUR AU - Martin, I. M. AU - Ison, C. A. AU - Aanensen, D. M. AU - Fenton, K. A. AU - Spratt, B. G. PY - 2004 DA - 2004// TI - Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area JO - J Infect Dis VL - 189 UR - https://doi.org/10.1086/383047 DO - 10.1086/383047 ID - Martin2004 ER - TY - JOUR AU - Maiden, M. C. J. AU - Bygraves, J. A. AU - Feil, E. AU - Morelli, G. AU - Russell, J. E. AU - Urwin, R. AU - Zhang, Q. AU - Zhou, J. AU - Zurth, K. AU - Caugant, D. A. PY - 1998 DA - 1998// TI - Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.6.3140 DO - 10.1073/pnas.95.6.3140 ID - Maiden1998 ER - TY - JOUR AU - Dingle, K. E. AU - Colles, F. M. AU - Wareing, D. R. A. AU - Ure, R. AU - Fox, A. J. AU - Bolton, F. J. AU - Bootsma, H. J. AU - Willems, R. J. L. AU - Urwin, R. AU - Maiden, M. C. J. PY - 2001 DA - 2001// TI - Multilocus sequence typing system for Campylobacter jejuni JO - J Clin Microbiol VL - 39 UR - https://doi.org/10.1128/JCM.39.1.14-23.2001 DO - 10.1128/JCM.39.1.14-23.2001 ID - Dingle2001 ER - TY - JOUR AU - Jones, N. AU - Bohnsack, J. F. AU - Takahashi, S. AU - Oliver, K. A. AU - Chan, M. S. AU - Kunst, F. AU - Glaser, P. AU - Rusniok, C. AU - Crook, D. W. AU - Harding, R. M. PY - 2003 DA - 2003// TI - Multilocus sequence typing system for group B Streptococcus JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.6.2530-2536.2003 DO - 10.1128/JCM.41.6.2530-2536.2003 ID - Jones2003 ER - TY - JOUR AU - Priest, F. G. AU - Barker, M. AU - Baillie, L. W. AU - Holmes, E. C. AU - Maiden, M. C. PY - 2004 DA - 2004// TI - Population structure and evolution of the Bacillus cereusgroup JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.23.7959-7970.2004 DO - 10.1128/JB.186.23.7959-7970.2004 ID - Priest2004 ER - TY - JOUR AU - Bennett, J. S. AU - Griffiths, D. T. AU - McCarthy, N. D. AU - Sleeman, K. L. AU - Jolley, K. A. AU - Crook, D. W. AU - Maiden, M. C. PY - 2005 DA - 2005// TI - Genetic diversity and carriage dynamics of Neisseria lactamicain infants JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.4.2424-2432.2005 DO - 10.1128/IAI.73.4.2424-2432.2005 ID - Bennett2005 ER - TY - JOUR AU - Pullinger, G. D. AU - Lopez-Benavides, M. AU - Coffey, T. J. AU - Williamson, J. H. AU - Cursons, R. T. AU - Summers, E. AU - Lacy-Hulbert, J. AU - Maiden, M. C. AU - Leigh, J. A. PY - 2006 DA - 2006// TI - Application of Streptococcus uberismultilocus sequence typing: analysis of the population structure detected among environmental and bovine isolates from New Zealand and the United Kingdom JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.2.1429-1436.2006 DO - 10.1128/AEM.72.2.1429-1436.2006 ID - Pullinger2006 ER - TY - CHAP AU - Bennett, J. S. AU - Jolley, K. A. AU - Maiden, M. C. J. PY - 2002 DA - 2002// TI - Is the gonococcus a clonal complex of the meningococcus? BT - Proceedings of the 13th International Pathogenic Neisseria Conference PB - 42. Nordberg Aksidenstrykkeri AS CY - Oslo, Norway ID - Bennett2002 ER - TY - STD TI - Neisseria MLST website. [http://pubmlst.org/neisseria/] UR - http://pubmlst.org/neisseria/ ID - ref23 ER - TY - JOUR AU - Jolley, K. A. AU - Chan, M. S. AU - Maiden, M. C. PY - 2004 DA - 2004// TI - mlstdbNet – distributed multi-locus sequence typing (MLST) databases JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-86 DO - 10.1186/1471-2105-5-86 ID - Jolley2004 ER - TY - JOUR AU - Jolley, K. A. AU - Kalmusova, J. AU - Feil, E. J. AU - Gupta, S. AU - Musilek, M. AU - Kriz, P. AU - Maiden, M. C. PY - 2000 DA - 2000// TI - Carried meningococci in the Czech Republic: a diverse recombining population JO - J Clin Microbiol VL - 38 ID - Jolley2000 ER - TY - JOUR AU - Bandelt, H. J. AU - Dress, A. W. PY - 1992 DA - 1992// TI - Split decomposition: a new and useful approach to phylogenetic analysis of distance data JO - Mol Phylogenet Evol VL - 1 UR - https://doi.org/10.1016/1055-7903(92)90021-8 DO - 10.1016/1055-7903(92)90021-8 ID - Bandelt1992 ER - TY - JOUR AU - Palmer, H. M. AU - Arnold, C. PY - 2001 DA - 2001// TI - Genotyping Neisseria gonorrhoeaeusing fluorescent amplified fragment length polymorphism analysis JO - J Clin Microbiol VL - 39 UR - https://doi.org/10.1128/JCM.39.6.2325-2329.2001 DO - 10.1128/JCM.39.6.2325-2329.2001 ID - Palmer2001 ER - TY - JOUR AU - Spratt, B. G. AU - Maiden, M. C. J. PY - 1999 DA - 1999// TI - Bacterial population genetics, evolution and epidemiology JO - Proc R Soc Lond B Biol Sci VL - 354 UR - https://doi.org/10.1098/rstb.1999.0423 DO - 10.1098/rstb.1999.0423 ID - Spratt1999 ER - TY - JOUR AU - Bash, M. C. AU - Zhu, P. AU - Gulati, S. AU - McKnew, D. AU - Rice, P. A. AU - Lynn, F. PY - 2005 DA - 2005// TI - por Variable-region typing by DNA probe hybridization is broadly applicable to epidemiologic studies of Neisseria gonorrhoeae JO - J Clin Microbiol VL - 43 UR - https://doi.org/10.1128/JCM.43.4.1522-1530.2005 DO - 10.1128/JCM.43.4.1522-1530.2005 ID - Bash2005 ER - TY - JOUR AU - Feavers, I. M. AU - Gray, S. J. AU - Urwin, R. AU - Russell, J. E. AU - Bygraves, J. A. AU - Kaczmarski, E. B. AU - Maiden, M. C. J. PY - 1999 DA - 1999// TI - Multilocus sequence typing and antigen gene sequencing in the investigation of a meningococcal disease outbreak JO - J Clin Microbiol VL - 37 ID - Feavers1999 ER - TY - JOUR AU - Feavers, I. M. AU - Maiden, M. C. J. PY - 1998 DA - 1998// TI - A gonococcal porA pseudogene: implications for understanding the evolution and pathogenicity of Neisseria gonorrhoeae JO - Mol Microbiol VL - 30 UR - https://doi.org/10.1046/j.1365-2958.1998.01101.x DO - 10.1046/j.1365-2958.1998.01101.x ID - Feavers1998 ER - TY - JOUR AU - Saez-Nieto, J. A. AU - Lujan, R. AU - Martinez-Suarez, J. V. AU - Berron, S. AU - Vazquez, J. A. AU - Vinas, M. AU - Campos, J. PY - 1990 DA - 1990// TI - Neisseria lactamica and Neisseria polysacchareaas possible sources of meningococcal beta-lactam resistance by genetic transformation JO - Antimicrob Agents Chemother VL - 34 UR - https://doi.org/10.1128/AAC.34.11.2269 DO - 10.1128/AAC.34.11.2269 ID - Saez-Nieto1990 ER - TY - JOUR AU - Vázquez, J. A. AU - Berron, S. AU - O'Rourke, M. AU - Carpenter, G. AU - Feil, E. AU - Smith, N. H. AU - Spratt, B. G. PY - 1995 DA - 1995// TI - Interspecies recombination in nature: a meningococcus that has acquired a gonococcal PIB porin JO - Mol Microbiol VL - 15 UR - https://doi.org/10.1111/j.1365-2958.1995.tb02275.x DO - 10.1111/j.1365-2958.1995.tb02275.x ID - Vázquez1995 ER - TY - JOUR AU - Caugant, D. A. AU - Høiby, E. A. AU - Magnus, P. AU - Scheel, O. AU - Hoel, T. AU - Bjune, G. AU - Wedege, E. AU - Eng, J. AU - Frøholm, L. O. PY - 1994 DA - 1994// TI - Asymptomatic carriage of Neisseria meningitidisin a randomly sampled population JO - J Clin Microbiol VL - 32 ID - Caugant1994 ER - TY - JOUR AU - Cartwright, K. A. V. AU - Stuart, J. M. AU - Jones, D. M. AU - Noah, N. D. PY - 1987 DA - 1987// TI - The Stonehouse survey: nasopharyngeal carriage of meningococci and Neisseria lactamica JO - Epidemiol Infect VL - 99 UR - https://doi.org/10.1017/S0950268800066449 DO - 10.1017/S0950268800066449 ID - Cartwright1987 ER - TY - JOUR AU - Olsen, S. F. AU - Djurhuus, B. AU - Rasmussen, K. AU - Joensen, H. D. AU - Larsen, S. O. AU - Zoffman, H. AU - Lind, I. PY - 1991 DA - 1991// TI - Pharyngeal carriage of Neisseria meningitidis and Neisseria lactamicain households with infants within areas with high and low incidences of meningococcal disease JO - Epidemiol Infect VL - 106 UR - https://doi.org/10.1017/S0950268800067492 DO - 10.1017/S0950268800067492 ID - Olsen1991 ER - TY - JOUR AU - Blakebrough, I. S. AU - Greenwood, B. M. AU - Whittle, H. C. AU - Bradley, A. K. AU - Gilles, H. M. PY - 1982 DA - 1982// TI - The epidemiology of infections due to Neisseria meningitidis and Neisseria lactamicain a northern Nigerian community JO - J Infect Dis VL - 146 UR - https://doi.org/10.1093/infdis/146.5.626 DO - 10.1093/infdis/146.5.626 ID - Blakebrough1982 ER - TY - JOUR AU - Hanage, W. P. AU - Fraser, C. AU - Spratt, B. G. PY - 2005 DA - 2005// TI - Fuzzy species among recombinogenic bacteria JO - BMC Biology VL - 3 UR - https://doi.org/10.1186/1741-7007-3-6 DO - 10.1186/1741-7007-3-6 ID - Hanage2005 ER - TY - JOUR AU - Cann, K. J. AU - Rogers, T. R. PY - 1989 DA - 1989// TI - The phenotypic relationship of Neisseria polysaccharea to commensal and pathogenic Neisseriaspp JO - J Med Microbiol VL - 29 UR - https://doi.org/10.1099/00222615-29-4-251 DO - 10.1099/00222615-29-4-251 ID - Cann1989 ER - TY - JOUR AU - Knapp, J. S. AU - Hook, E. W. PY - 1988 DA - 1988// TI - Prevalence and persistence of Neisseria cinerea and other Neisseriaspp. in adults JO - J Clin Microbiol VL - 26 ID - Knapp1988 ER - TY - JOUR AU - Dossett, J. H. AU - Appelbaum, P. C. AU - Knapp, J. S. AU - Totten, P. A. PY - 1985 DA - 1985// TI - Proctitis associated with Neisseria cinerea misidentified as Neisseria gonorrhoeaein a child JO - J Clin Microbiol VL - 21 ID - Dossett1985 ER - TY - JOUR AU - Guibourdenche, M. AU - Popoff, M. Y. AU - Riou, J. Y. PY - 1986 DA - 1986// TI - Deoxyribonucleic acid relatedness among Neisseria gonorrhoeae, N. meningitidis,N. lactamica, N. cinerea and "Neisseria polysaccharea" JO - Ann Inst Pasteur Microbiol VL - 137B UR - https://doi.org/10.1016/S0769-2609(86)80106-5 DO - 10.1016/S0769-2609(86)80106-5 ID - Guibourdenche1986 ER - TY - CHAP AU - Jolley, K. A. ED - Pollard, A. J. ED - Maiden, M. C. PY - 2001 DA - 2001// TI - Multi-locus sequence typing BT - Meningococcal Disease: Methods and Protocols PB - Humana Press CY - Totowa, New Jersey UR - https://doi.org/10.1385/1-59259-149-3:173 DO - 10.1385/1-59259-149-3:173 ID - Jolley2001 ER - TY - JOUR AU - Embley, T. M. PY - 1991 DA - 1991// TI - The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes JO - Lett Appl Microbiol VL - 13 UR - https://doi.org/10.1111/j.1472-765X.1991.tb00600.x DO - 10.1111/j.1472-765X.1991.tb00600.x ID - Embley1991 ER - TY - JOUR AU - Staden, R. PY - 1996 DA - 1996// TI - The Staden sequence analysis package JO - Mol Biotechnol VL - 5 UR - https://doi.org/10.1007/BF02900361 DO - 10.1007/BF02900361 ID - Staden1996 ER - TY - JOUR AU - Jolley, K. A. AU - Feil, E. J. AU - Chan, M. S. AU - Maiden, M. C. PY - 2001 DA - 2001// TI - Sequence type analysis and recombinational tests (START) JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.12.1230 DO - 10.1093/bioinformatics/17.12.1230 ID - Jolley2001 ER - TY - JOUR AU - Rozas, J. AU - Sanchez-DelBarrio, J. C. AU - Messeguer, X. AU - Rozas, R. PY - 2003 DA - 2003// TI - DnaSP, DNA polymorphism analyses by the coalescent and other methods JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg359 DO - 10.1093/bioinformatics/btg359 ID - Rozas2003 ER - TY - JOUR AU - Hey, J. PY - 1991 DA - 1991// TI - The structure of genealogies and the distribution of fixed differences between DNA sequence samples from natural populations JO - Genetics VL - 128 ID - Hey1991 ER - TY - JOUR AU - Hudson, R. R. AU - Slatkin, M. AU - Maddison, W. P. PY - 1992 DA - 1992// TI - Estimation of levels of gene flow from DNA sequence data JO - Genetics VL - 132 ID - Hudson1992 ER - TY - BOOK AU - Schneider, S. AU - Roessli, D. AU - Excoffier, L. PY - 2000 DA - 2000// TI - Arlequin Version 2.000: A Software for Population Genetic Data Analysis PB - University of Geneva CY - Geneva ID - Schneider2000 ER - TY - JOUR AU - Kumar, S. AU - Tamura, K. AU - Jakobsen, I. B. AU - Nei, M. PY - 2001 DA - 2001// TI - MEGA2: molecular evolutionary genetics analysis software JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.12.1244 DO - 10.1093/bioinformatics/17.12.1244 ID - Kumar2001 ER - TY - JOUR AU - Kimura, M. PY - 1980 DA - 1980// TI - A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences JO - J Mol Evol VL - 16 UR - https://doi.org/10.1007/BF01731581 DO - 10.1007/BF01731581 ID - Kimura1980 ER - TY - JOUR AU - Huson, D. H. PY - 1998 DA - 1998// TI - SplitsTree: analyzing and visualizing evolutionary data JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.1.68 DO - 10.1093/bioinformatics/14.1.68 ID - Huson1998 ER -