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Table 2 Human ANTP class homeobox genes and pseudogenes

From: Classification and nomenclature of all human homeobox genes

Human ANTP-class homeobox genes and pseudogenes
HOXL subclass
Family Gene symbol Gene name Location Entrez gene ID Previous symbols
Cdx CDX1 caudal type homeobox 1 5q32 1044  
  CDX2 caudal type homeobox 2 13q12.2 1045 CDX3
  CDX4 caudal type homeobox 4 Xq13.2 1046  
Evx EVX1 even-skipped homeobox 1 7p15.2 2128  
  EVX2 even-skipped homeobox 2 2q31.1 344191  
Gbx GBX1 gastrulation brain homeobox 1 7q36.1 2636  
  GBX2 gastrulation brain homeobox 2 2q37.2 2637  
Gsx GSX1 GS homeobox 1 13q12.2 219409 GSH1
  GSX2 GS homeobox 2 4q12 170825 GSH2
Hox1 HOXA1 homeobox A1 7p15.2 3198 HOX1F
  HOXB1 homeobox B1 17q21.32 3211 HOX2I
  HOXD1 homeobox D1 2q31.1 3231 HOX4G
Hox2 HOXA2 homeobox A2 7p15.2 3199 HOX1K
  HOXB2 homeobox B2 17q21.32 3212 HOX2H
Hox3 HOXA3 homeobox A3 7p15.2 3200 HOX1E
  HOXB3 homeobox B3 17q21.32 3213 HOX2G
  HOXD3 homeobox D3 2q31.1 3232 HOX4A
Hox4 HOXA4 homeobox A4 7p15.2 3201 HOX1D
  HOXB4 homeobox B4 17q21.32 3214 HOX2F
  HOXC4 homeobox C4 12q13.13 3221 HOX3E
  HOXD4 homeobox D4 2q31.1 3233 HOX4B
Hox5 HOXA5 homeobox A5 7p15.2 3202 HOX1C
  HOXB5 homeobox B5 17q21.32 3215 HOX2A
  HOXC5 homeobox C5 12q13.13 3222 HOX3D
Hox6-8 HOXA6 homeobox A6 7p15.2 3203 HOX1B
  HOXB6 homeobox B6 17q21.32 3216 HOX2B
  HOXC6 homeobox C6 12q13.13 3223 HOX3C
  HOXA7 homeobox A7 7p15.2 3204 HOX1A
  HOXB7 homeobox B7 17q21.32 3217 HOX2C
  HOXB8 homeobox B8 17q21.32 3218 HOX2D
  HOXC8 homeobox C8 12q13.13 3224 HOX3A
  HOXD8 homeobox D8 2q31.1 3234 HOX4E
Hox9-13 HOXA9 homeobox A9 7p15.2 3205 HOX1G
  HOXB9 homeobox B9 17q21.32 3219 HOX2E
  HOXC9 homeobox C9 12q13.13 3225 HOX3B
  HOXD9 homeobox D9 2q31.1 3235 HOX4C
  HOXA10 homeobox A10 7p15.2 3206 HOX1H
  HOXC10 homeobox C10 12q13.13 3226 HOX3I
  HOXD10 homeobox D10 2q31.1 3236 HOX4D, HOX4E
  HOXA11 homeobox A11 7p15.2 3207 HOX1I
  HOXC11 homeobox C11 12q13.13 3227 HOX3H
  HOXD11 homeobox D11 2q31.1 3237 HOX4F
  HOXC12 homeobox C12 12q13.13 3228 HOX3F
  HOXA13 homeobox A13 7p15.2 3209 HOX1J
  HOXB13 homeobox B13 17q21.32 10481  
  HOXC13 homeobox C13 12q13.13 3229 HOX3G
  HOXD13 homeobox D13 2q31.1 3239 HOX4I
Mnx MNX1 motor neuron and pancreas homeobox 1 7q36.3 3110 HLXB9, HB9, HOXHB9
Meox MEOX1 mesenchyme homeobox 1 17q21.31 4222 MOX1
  MEOX2 mesenchyme homeobox 2 7p21.1 4223 MOX2, GAX
Pdx PDX1 pancreatic and duodenal homeobox 1 13q12.2 3651 IPF1, IUF1, IDX1, STF1
NKL subclass
Barhl BARHL1 BarH-like homeobox 1 9q34.13 56751  
  BARHL2 BarH-like homeobox 2 1p22.2 343472  
Barx BARX1 BARX homeobox 1 9q22.32 56033  
  BARX2 BARX homeobox 2 11q24.3 8538  
Bsx BSX brain specific homeobox 11q24.1 390259  
Dbx DBX1 developing brain homeobox 1 11p15.1 120237  
  DBX2 developing brain homeobox 2 12q12 440097  
Dlx DLX1 distal-less homeobox 1 2q31.1 1745  
  DLX2 distal-less homeobox 2 2q31.1 1746 TES1
  DLX3 distal-less homeobox 3 17q21.33 1747  
  DLX4 distal-less homeobox 4 17q21.33 1748 DLX7, DLX8, DLX9, BP1
  DLX5 distal-less homeobox 5 7q21.3 1749  
  DLX6 distal-less homeobox 6 7q21.3 1750  
Emx EMX1 empty spiracles homeobox 1 2p13.2 2016  
  EMX2 empty spiracles homeobox 2 10q26.11 2018  
En EN1 engrailed homeobox 1 2q14.2 2019  
  EN2 engrailed homeobox 2 7q36.3 2020  
Hhex HHEX hematopoietically expressed homeobox 10q23.33 3087 HEX, PRH, PRHX
Hlx HLX H2.0-like homeobox 1q41 3142 HLX1, HB24
Lbx LBX1 ladybird homeobox 1 10q24.32 10660 LBX1H, HPX6
  LBX2 ladybird homeobox 2 2p13.1 85474  
Msx MSX1 msh homeobox 1 4p16.2 4487 HOX7
  MSX2 msh homeobox 2 5q35.2 4488 HOX8, MSH
  MSX2P1 msh homeobox 2 pseudogene 17q23.2 55545 HPX5, MSX2P
Nanog NANOG Nanog homeobox 12p13.31 79923  
  NANOGP1 Nanog homeobox pseudogene 1 12p13.31 404635 NANOG2
  NANOGP2 Nanog homeobox pseudogene 2 2q36.1 414131 NANOGP4
  NANOGP3 Nanog homeobox pseudogene 3 6p12.1 340217  
  NANOGP4 Nanog homeobox pseudogene 4 7p15.1 414132 NANOGP2
  NANOGP5 Nanog homeobox pseudogene 5 9q31.1 414133  
  NANOGP6 Nanog homeobox pseudogene 6 10q24.2 414134  
  NANOGP7 Nanog homeobox pseudogene 7 14q32.12 414130 NANOGP3
  NANOGP8 Nanog homeobox pseudogene 8 15q14 388112 NANOGP1
  NANOGP9 Nanog homeobox pseudogene 9 Xq12 349386 NANOGP6
  NANOGP10 Nanog homeobox pseudogene 10 Xp11.3 349372 NANOGP5
  NANOGP11 Nanog homeobox pseudogene 11 6q25.2 414135  
Nk1 NKX1-1 NK1 homeobox 1 4p16.3 54279 NKX1.1, HSPX153, HPX153
  NKX1-2 NK1 homeobox 2 10q26.13 390010 NKX1.2, C10orf121
Nk2.1 NKX2-1 NK2 homeobox 1 14q13.3 7080 NKX2.1, NKX2A, TTF1, TITF1
  NKX2-4 NK2 homeobox 4 20p11.22 4823 NKX2.4, NKX2D
Nk2.2 NKX2-2 NK2 homeobox 2 20p11.22 4821 NKX2.2, NKX2B
  NKX2-8 NK2 homeobox 8 14q13.3 26257 NKX2.8, NKX2H
Nk3 NKX3-1 NK3 homeobox 1 8p21.2 4824 NKX3.1, NKX3A
  NKX3-2 NK3 homeobox 2 4p15.33 579 NKX3.2, NKX3B, BAPX1
Nk4 NKX2-3 NK2 homeobox 3 10q24.2 159296 NKX2.3, NKX2C, NKX4-3, CSX3
  NKX2-5 NK2 homeobox 5 5q35.1 1482 NKX2.5, NKX2E, NKX4-1, CSX, CSX1
  NKX2-6 NK2 homeobox 6 8p21.2 137814 NKX2.6, NKX4-2, CSX2
Nk5/Hmx HMX1 H6 family homeobox 1 4p16.1 3166 NKX5-3, H6
  HMX2 H6 family homeobox 2 10q26.13 3167 NKX5-2, H6L
  HMX3 H6 family homeobox 3 10q26.13 340784 NKX5-1
Nk6 NKX6-1 NK6 homeobox 1 4q21.23 4825 NKX6.1, NKX6A
  NKX6-2 NK6 homeobox 2 10q26.3 84504 NKX6.2, NKX6B, GTX
  NKX6-3 NK6 homeobox 3 8p11.21 157848 NKX6.3
Noto NOTO notochord homeobox 2p13.2 344022  
Tlx TLX1 T-cell leukemia homeobox 1 10q24.32 3195 HOX11, TCL3
  TLX2 T-cell leukemia homeobox 2 2p13.1 3196 HOX11L1, NCX
  TLX3 T-cell leukemia homeobox 3 5q35.1 30012 HOX11L2, RNX
Vax VAX1 ventral anterior homeobox 1 10q26.11 11023  
  VAX2 ventral anterior homeobox 2 2p13.3 25806  
Ventx VENTX VENT homeobox 10q26.3 27287 VENTX2, HPX42B
  VENTXP1 VENT homeobox pseudogene 1 Xp21.3 139538 VENTX2P1, NA88A
  VENTXP2 VENT homeobox pseudogene 2 13q31.1 347975 VENTX2P2
  VENTXP3 VENT homeobox pseudogene 3 12q21.1 349814 VENTX2P3
  VENTXP4 VENT homeobox pseudogene 4 3p24.2 152101 VENTX2P4
  VENTXP5 VENT homeobox pseudogene 5 8p12 442384  
  VENTXP6 VENT homeobox pseudogene 6 8q21.11 552879  
  VENTXP7 VENT homeobox pseudogene 7 3p24.3 391518 VENTX1, HPX42
  1. Human ANTP class homeobox genes and pseudogenes including full names, chromosomal locations, Entrez Gene IDs and previous symbols. NANOGP1 is a duplicate of NANOG.