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Table 3 Human PRD class homeobox genes and pseudogenes

From: Classification and nomenclature of all human homeobox genes

Human PRD-class homeobox genes and pseudogenes
Family Gene symbol Gene name Location Entrez gene IDc Previous symbols
Alx ALX1 ALX homeobox 1 12q21.31 8092 CART1
  ALX3 ALX homeobox 3 1p13.3 257  
  ALX4 ALX homeobox 4 11p11.2 6059  
Argfx ARGFX arginine-fifty homeobox 3q13.33 503582  
  ARGFXP1 arginine-fifty homeobox pseudogene 1 5q23.2 503583  
  ARGFXP2 arginine-fifty homeobox pseudogene 2 17q11.2 503640  
Arx ARX aristaless related homeobox Xp21.3 170302 ISSX
Dmbx DMBX1 diencephalon/mesencephalon brain homeobox 1 1p34.1 127343 MBX, OTX3, PAXB
Dprx DPRX divergent paired-related homeobox 19q13.42 503834  
  DPRXP1 divergent paired-related homeobox pseudogene 1 2q32.1 503641  
  DPRXP2 divergent paired-related homeobox pseudogene 2 6p21.31 503643  
  DPRXP3 divergent paired-related homeobox pseudogene 3 14q13.2 503644  
  DPRXP4 divergent paired-related homeobox pseudogene 4 17q11.2 503645  
  DPRXP5 divergent paired-related homeobox pseudogene 5 21q22.13 503646  
  DPRXP6 divergent paired-related homeobox pseudogene 6 Xp11.4 503647  
  DPRXP7 divergent paired-related homeobox pseudogene 7 Xq23 503648  
Drgx DRGX dorsal root ganglia homeobox 10q11.23 644168 DRG11, PRRXL1
Dux DUXA double homeobox A 19q13.43 503835  
  DUXAP1 double homeobox A pseudogene 1 2p11.2 503630  
  DUXAP2 double homeobox A pseudogene 2 8q22.3 503631  
  DUXAP3 double homeobox A pseudogene 3 10q11.21 503632  
  DUXAP4 double homeobox A pseudogene 4 10q11.21 503633  
  DUXAP5 double homeobox A pseudogene 5 11q23.3 503634  
  DUXAP6 double homeobox A pseudogene 6 15q26.1 503635  
  DUXAP7 double homeobox A pseudogene 7 20p11.23 503636  
  DUXAP8 double homeobox A pseudogene 8 22q11.21 503637  
  DUXAP9 double homeobox A pseudogene 9 14qcen 503638  
  DUXAP10 double homeobox A pseudogene 10 14q11.2 503639  
  DUXB double homeobox B 16q23.1 100033411  
Esx ESX1 ESX homeobox 1 Xq22.2 80712 ESX1L, ESXR1
Gsc GSC goosecoid homeobox 14q32.13 145258 GSC1
  GSC2 goosecoid homeobox 2 22q11.21 2928 GSCL
Hesx HESX1 HESX homeobox 1 3p14.3 8820 RPX, ANF
Hopx HOPX HOP homeobox 4q12 84525 HOP, OB1, LAGY, NECC1, SMAP31
Isx ISX intestine specific homeobox 22q12.3 91464 RAXLX
Leutx LEUTX Leucine twenty homeobox 19q13.2 342900  
Mix MIXL Mix paired-like homeobox 1q42.12 83881 MIX, MIXL1, MILD1
Nobox NOBOX NOBOX oogenesis homeobox 7q35 135935 OG2, OG2X
Otp OTP orthopedia homeobox 5q14.1 23440  
Otx OTX1 orthodenticle homeobox 1 2p15 5013  
  OTX2 orthodenticle homeobox 2 14q22.3 5015  
  OTX2P1 orthodenticle homeobox 2 pseudogene 9q21.2 100033409 OTX2P
  CRX cone-rod homeobox 19q13.32 1406 OTX3
Pax2/5/8 PAX2 paired box 2 10q24.31 5076  
  PAX5 paired box 5 9p13.2 5079 BSAP
  PAX8 paired box 8 2q13 7849  
Pax3/7 PAX3 paired box 3 2q36.1 5077 HUP2
  PAX7 paired box 7 1p36.13 5081 HUP1, PAX7B
Pax4/6 PAX4 paired box 4 7q32.1 5078  
  PAX6 paired box 6 11p13 5080  
Phox PHOX2A paired-like homeobox 2a 11q13.4 401 PMX2A, ARIX
  PHOX2B paired-like homeobox 2b 4p13 8929 PMX2B, NBPhox
Pitx PITX1 pituitary homeobox 1 5q31.1 5307 PTX1, POTX, BFT
  PITX2 pituitary homeobox 2 4q25 5308 PTX2, ARP1, RGS, RIEG, RIEG1
  PITX3 pituitary homeobox 3 10q24.32 5309 PTX3
Prop PROP1 PROP paired-like homeobox 1 5q35.3 5626  
Prrx PRRX1 paired related homeobox 1 1q24.3 5396 PRX1, PMX1, PHOX1
  PRRX2 paired related homeobox 2 9q34.11 51450 PRX2, PMX2
Rax RAX retina and anterior neural fold homeobox 18q21.31 30062 RX
  RAX2 retina and anterior neural fold homeobox 2 19p13.3 84839 QRX, RAXL1
Rhox RHOXF1 Rhox homeobox family, member 1 Xq24 158800 PEPP1, OTEX
  RHOXF2 Rhox homeobox family, member 2 Xq24 84528 PEPP2
  RHOXF2B Rhox homeobox family, member 2B Xq24 727940 PEPP2L
Sebox SEBOX SEBOX homeobox 17q11.2 645832 OG9, OG9X
Shox SHOX short stature homeobox Xp22.33/ Yp11.32 6473 SHOXY, GCFX, PHOG
  SHOX2 short stature homeobox 2 3q25.32 6474 SHOT, OG12, OG12X
Tprx TPRX1 tetra-peptide repeat homeobox 1 19q13.32 284355  
  TPRX2P tetra-peptide repeat homeobox 2 pseudogene 19q13.32 503627  
  TPRX1P1 tetra-peptide repeat homeobox 1 pseudogene 1 10q22.3 503628  
  TPRX1P2 tetra-peptide repeat homeobox 1 pseudogene 2 10q22.3 503629  
  TPRXL tetra-peptide repeat homeobox-like 3p25.1 348825  
Uncx UNCX UNC homeobox 7p22.3 340260 PHD1, UNCX4.1
Vsx VSX1 visual system homeobox 1 20p11.21 30813 KTCN, RINX
  VSX2 visual system homeobox 2 14q24.3 338917 RET1, HOX10, CHX10
  1. Human PRD class homeobox genes and pseudogenes including full names, chromosomal locations, Entrez Gene IDs and previous symbols. Pax2/5/8-family genes contain a partial homeobox. RHOXF2B is a duplicate of RHOXF2. TPRX2P is a duplicate of TPRX1.