From: Classification and nomenclature of all human homeobox genes
Human LIM-class homeobox genes | |||||
---|---|---|---|---|---|
Family | Gene symbol | Gene name | Location | Entrez gene ID | Previous symbols |
Isl | ISL1 | ISL LIM homeobox 1 | 5q11.2 | 3670 | Â |
 | ISL2 | ISL LIM homeobox 2 | 15q24.3 | 64843 |  |
Lhx1/5 | LHX1 | LIM homeobox 1 | 17q12 | 3975 | LIM1 |
 | LHX5 | LIM homeobox 5 | 12q24.13 | 64211 |  |
Lhx2/9 | LHX2 | LIM homeobox 2 | 9q33.3 | 9355 | LH2 |
 | LHX9 | LIM homeobox 9 | 1q31.3 | 56956 |  |
Lhx3/4 | LHX3 | LIM homeobox 3 | 9q34.3 | 8022 | M2-LHX3 |
 | LHX4 | LIM homeobox 4 | 1q25.3 | 89884 | GSH4 |
Lhx6/8 | LHX6 | LIM homeobox 6 | 9q33.2 | 26468 | LHX6.1 |
 | LHX8 | LIM homeobox 8 | 1p31.1 | 431707 | LHX7 |
Lmx | LMX1A | LMX LIM homeobox 1A | 1q24.1 | 4009 | LMX1, LMX1.1 |
 | LMX1B | LMX LIM homeobox 1B | 9q33.3 | 4010 | LMX2, LMX1.2 |
Human POU-class homeobox genes and pseudogenes | |||||
Hdx | HDX | highly divergent homeobox | Xq21.1 | 139324 | CXorf43 |
Pou1 | POU1F1 | POU class 1 homeobox 1 | 3p11.2 | 5449 | PIT1, GHF1 |
Pou2 | POU2F1 | POU class 2 homeobox 1 | 1q24.2 | 5451 | OCT1, OTF1 |
 | POU2F2 | POU class 2 homeobox 2 | 19q13.2 | 5452 | OCT2, OTF2 |
 | POU2F3 | POU class 2 homeobox 3 | 11q23.3 | 25833 | OCT11, PLA1, EPOC1, SKN1A |
Pou3 | POU3F1 | POU class 3 homeobox 1 | 1p34.3 | 5453 | OCT6, OTF6, SCIP |
 | POU3F2 | POU class 3 homeobox 2 | 6q16.2 | 5454 | OCT7, OTF7, BRN2, POUF3 |
 | POU3F3 | POU class 3 homeobox 3 | 2q12.1 | 5455 | OTF8, BRN1 |
 | POU3F4 | POU class 3 homeobox 4 | Xq21.1 | 5456 | OTF9, BRN4 |
Pou4 | POU4F1 | POU class 4 homeobox 1 | 13q31.1 | 5457 | BRN3A, RDC1, Oct-T1 |
 | POU4F2 | POU class 4 homeobox 2 | 4q31.22 | 5458 | BRN3B, BRN3.2 |
 | POU4F3 | POU class 4 homeobox 3 | 5q32 | 5459 | BRN3C |
Pou5 | POU5F1 | POU class 5 homeobox 1 | 6p21.33 | 5460 | OCT3, OTF3, OCT4, OTF4 |
 | POU5F1P1 | POU class 5 homeobox 1 pseudogene 1 | 8q24.21 | 5462 | OTF3C, OTF3P1, POU5FLC8 |
 | POU5F1P2 | POU class 5 homeobox 1 pseudogene 2 | 8q22.3 | 100009665 |  |
 | POU5F1P3 | POU class 5 homeobox 1 pseudogene 3 | 12p13.31 | 642559 | OTF3L, POU5F1L, POU5FLC12 |
 | POU5F1P4 | POU class 5 homeobox 1 pseudogene 4 | 1q22 | 645682 | POU5FLC1 |
 | POU5F1P5 | POU class 5 homeobox 1 pseudogene 5 | 10q21.3 | 100009667 |  |
 | POU5F1P6 | POU class 5 homeobox 1 pseudogene 6 | 3q21.3 | 100009668 |  |
 | POU5F1P7 | POU class 5 homeobox 1 pseudogene 7 | 3q12.1 | 100009669 |  |
 | POU5F1P8 | POU class 5 homeobox 1 pseudogene 8 | 17q25.3 | 100009670 |  |
 | POU5F2 | POU class 5 homeobox 2 | 5q15 | 134187 | SPRM1 |
Pou6 | POU6F1 | POU class 6 homeobox 1 | 12q13.13 | 5463 | BRN5, MPOU, TCFB1 |
 | POU6F2 | POU class 6 homeobox 2 | 7p14.1 | 11281 | WT5, WTSL, RPF1 |
Human HNF-class homeobox genes | |||||
Hmbox | HMBOX1 | homeobox containing 1 | 8p12 | 79618 | HNF1LA, PBHNF |
Hnf1 | HNF1A | HNF1 homeobox A | 12q24.31 | 6927 | TCF1, HNF1, LFB1 |
 | HNF1B | HNF1 homeobox B | 17q12 | 6928 | TCF2, LFB3, VHNF1 |
Human SINE-class homeobox genes | |||||
Six1/2 | SIX1 | SIX homeobox 1 | 14q23.1 | 6495 | Â |
 | SIX2 | SIX homeobox 2 | 2p21 | 10736 |  |
Six3/6 | SIX3 | SIX homeobox 3 | 2p21 | 6496 | Â |
 | SIX6 | SIX homeobox 6 | 14q23.1 | 4990 | OPTX2, Six9 |
Six4/5 | SIX4 | SIX homeobox 4 | 14q23.1 | 51804 | AREC3 |
 | SIX5 | SIX homeobox 5 | 19q13.32 | 147912 | DMAHP |
Human TALE-class homeobox genes and pseudogenes | |||||
Irx | IRX1 | iroquois homeobox 1 | 5p15.33 | Â | IRX-5 |
 | IRX1P1 | iroquois homeobox 1 pseudogene 1 | 13q12.12 | 79192 | IRXA1 |
 | IRX2 | iroquois homeobox 2 | 5p15.33 | 646390 |  |
 | IRX3 | iroquois homeobox 3 | 16q12.2 | 153572 | IRX-1 |
 | IRX4 | iroquois homeobox 4 | 5p15.33 | 50805 |  |
 | IRX4P1 | iroquois homeobox 4 pseudogene 1 | 18p11.22 | 100009671 |  |
 | IRX5 | iroquois homeobox 5 | 16q12.2 | 79190 | IRX2A |
 | IRX6 | iroquois homeobox 6 | 16q12.2 |  | IRX-3, IRX7 |
Meis | MEIS1 | Meis homeobox 1 | 2p14 | 4211 | Â |
 | MEIS2 | Meis homeobox 2 | 15q14 | 4212 | MRG1 |
 | MEIS3 | Meis homeobox 3 | 19q13.32 | 56917 | MRG2 |
 | MEIS3P1 | Meis homeobox 3 pseudogene 1 | 17p12 | 4213 | MRG2, MEIS3, MEIS4 |
 | MEIS3P2 | Meis homeobox 3 pseudogene 2 | 17p11.2 | 257468 |  |
Mkx | MKX | mohawk homeobox | 10p12.1 | 283078 | IRXL1, IFRX, C10orf48 |
Pbx | PBX1 | pre-B-cell leukemia homeobox 1 | 1q23.3 | 5087 | Â |
 | PBX2 | pre-B-cell leukemia homeobox 2 | 6p21.32 | 5089 | G17, HOX12, PBX2MHC |
 | PBX2P1 | pre-B-cell leukemia homeobox 2 pseudogene 1 | 3q24 | 5088 | PBXP1, PBX2 |
 | PBX3 | pre-B-cell leukemia homeobox 3 | 9q33.3 | 5090 |  |
 | PBX4 | pre-B-cell leukemia homeobox 4 | 19p13.11 | 80714 |  |
Pknox | PKNOX1 | PBX/knotted homeobox 1 | 21q22.3 | 5316 | PREP1, PKNOX1C |
 | PKNOX2 | PBX/knotted homeobox 2 | 11q24.2 | 63876 | PREP2 |
Tgif | TGIF1 | TGFB-induced factor homeobox 1 | 18p11.31 | 7050 | TGIF, HPE4 |
 | TGIF1P1 | TGFB-induced factor homeobox1 pseudogene 1 | 19q13.32 | 126052 |  |
 | TGIF2 | TGFB-induced factor homeobox 2 | 20q11.23 | 60436 |  |
 | TGIF2P1 | TGFB-induced factor homeobox 2 pseudogene 1 | 1q44 | 126826 |  |
 | TGIF2P2 | TGFB-induced factor homeobox 2 pseudogene 2 | 15q21.1 | 100009674 |  |
 | TGIF2P3 | TGFB-induced factor homeobox 2 pseudogene 3 | 15q21.1 | 100009672 |  |
 | TGIF2P4 | TGFB-induced factor homeobox 2 pseudogene 4 | 14q24.2 | 100009673 |  |
 | TGIF2LX | TGFB-induced factor homeobox 2-like, X-linked | Xq21.31 | 90316 | TGIFLX (retrogene) |
 | TGIF2LY | TGFB-induced factor homeobox 2-like, Y-linked | Yp11.2 | 90655 | TGIFLY (retrogene) |
Human CUT-class homeobox genes and pseudogenes | |||||
Onecut | ONECUT1 | one cut homeobox 1 | 15q21.3 | 3175 | HNF6, HNF6A |
 | ONECUT2 | one cut homeobox 2 | 18q21.31 | 9480 | OC2 |
 | ONECUT3 | one cut homeobox 3 | 19p13.3 | 390874 |  |
Cux | CUX1 | cut-like homeobox 1 | 7q22.1 | 1523 | CUTL1, CUX, CDP, COY1 |
 | CUX2 | cut-like homeobox 2 | 12q24.12 | 23316 | CUTL2 |
 | CUX2P1 | cut-like homeobox 2 pseudogene 1 | 10p14 | - |  |
 | CUX2P2 | cut-like homeobox 2 pseudogene 2 | 4q32.1 | - |  |
Satb | SATB1 | SATB homeobox 1 | 3p24.3 | 6304 | Â |
 | SATB2 | SATB homeobox 2 | 2q33.1 | 23314 |  |
Human PROS-class homeobox genes | |||||
Prox | PROX1 | prospero homeobox 1 | 1q41 | 5629 | Â |
 | PROX2 | prospero homeobox 2 | 14q24.3 | 283571 |  |
Human ZF-class homeobox genes and pseudogenes | |||||
Adnp | ADNP | activity-dependent neuroprotector homeobox | 20q13.13 | 23394 | ADNP1 |
 | ADNP2 | ADNP homeobox 2 | 18q23 | 22850 | ZNF508 |
Tshz | TSHZ1 | teashirt zinc finger homeobox 1 | 18q22.3 | 10194 | TSH1 |
 | TSHZ2 | teashirt zinc finger homeobox 2 | 20q13.2 | 128553 | TSH2, ZNF218, ZABC2, OVC10-2 |
 | TSHZ3 | teashirt zinc finger homeobox 3 | 19q12 | 57616 | TSH3, ZNF537 |
Zeb | ZEB1 | zinc finger E-box binding homeobox 1 | 10p11.22 | 6935 | ZFHX1A, deltaEF1, TCF8, ZEB |
 | ZEB2 | zinc finger E-box binding homeobox 2 | 2q22.3 | 9839 | ZFHX1B, SIP1, SMADIP1 |
 | ZEB2P1 | zinc finger E-box binding homeobox 2 pseudogene 1 | 4p15.32 | 100033412 |  |
Zfhx | ZFHX2 | zinc finger homeobox 2 | 14q11.2 | 85446 | Â |
 | ZFHX3 | zinc finger homeobox 3 | 16q22.3 | 463 | ATBT, ATBF1 |
 | ZFHX4 | zinc finger homeobox 4 | 8q21.11 | 79776 | ZFH4 |
Zhx/ | ZHX1 | zinc fingers and homeoboxes 1 | 8q24.13 | 11244 | Â |
Homez | ZHX2 | zinc fingers and homeoboxes 2 | 8q24.13 | 22882 | Â |
 | ZHX3 | zinc fingers and homeoboxes 3 | 20q12 | 23051 | TIX1 |
 | HOMEZ | homeobox and leucine zipper encoding | 14q11.2 | 57594 |  |
Human CERS-class homeobox genes | |||||
Cers | CERS2 | ceramide synthase 2 | 1p36.13-q24.1 | 29956 | LASS2, TRH3, TMSG1 |
 | CERS3 | ceramide synthase 3 | 15q26.3 | 204219 | LASS3 |
 | CERS4 | ceramide synthase 4 | 19p13.3 | 79603 | LASS4, TRH1 |
 | CERS5 | ceramide synthase 5 | 12q13.12 | 91012 | LASS5, TRH4 |
 | CERS6 | ceramide synthase 6 | 2q31 | 253782 | LASS6 |