Transcriptome analysis for Caenorhabditis elegansbased on novel expressed sequence tags

Table 1 Summary of gapped-expressed sequence tag matches and putative novel structures

% Cov	Gap size	Chromosome	First alignment block	Second alignment block	Putative novel structure
98	480	I	390514 to 390558	391038 to 391059	Skipped exon
96	489	I	5761023 to 5761058	5761547 to 5761592	Novel end exon confirmed*
98	101	I	7642453 to 7642487	7642588 to 7642631	Novel end exon
98	62	I	9724862 to 9724908	9724970 to 9725025	Alternate exon-intron boundary
98	157	I	11931105 to 11931163	11931320 to 11931345	Novel internal exon
92	45	II	2782924 to 2782962	2783007 to 2783086	Novel end exon confirmed*
98	224	II	10828328 to 10828404	10828628 to 10828667	Confirmed intron*
91	461	II	13635576 to 13635653	13636114 to 13636163	Confirmed intron*
98	548	II	14747166 to 14747225	14747773 to 14747821	Novel end exon
98	306	III	8552492 to 8552538	8552844 to 8552868	Alternate exon-intron boundary
92	277	III	11751557 to 11751606	11751883 to 11751921	Novel end exons confirmed*
92	1364	III	12639534 to 12639558	12640922 to 12640967	Novel internal exon
98	926	IV	9350535 to 9350565	9351491 to 9351529	Confirmed intron*
97	900	V	1981345 to 1981373	1982273 to 1982364	Novel end exons
98	50	X	11824129 to 11824180	11824230 to 11824259	Novel transcript/novel end exons

* A recent WormBase release (WS180) has since confirmed these exon-intron boundaries; the original mapping analysis was performed using WB160.

ISSN: 1741-7007