TonB-dependent transporters and their occurrence in cyanobacteria

Oliver Mirus; Sascha Strauss; Kerstin Nicolaisen; Arndt von Haeseler; Enrico Schleiff

doi:10.1186/1741-7007-7-68

Table 1 Sequences used for the phylogenetic analysis of cyanobacteria

From: TonB-dependent transporters and their occurrence in cyanobacteria

Code	Old	New	Spot	Database code	Species
Am1 B0127	BtuB	BtuB	26	gi\|158339996	Acaryochloris marina MBIC11017
Am1 3407	CirA	HutA	3	gi\|158336543
Am1 3358	CirA	IutA	38	gi\|158336494
Am1 A0170	CirA	ViuA	50	gi\|158339820
Am1 3383	CirA	ViuA	49	gi\|158336519
Am1 A0184	Fiu	FhuA	58	gi\|158339834
Am1 A0274	FhuE	FhuA	57	gi\|158339535
Am1 A0198	-	FhuA	71	gi\|158339845
Am1 A0157	FhuE	FhuA	59	gi\|158339807
Am1 3393	FhuE	FhuA	72	gi\|158336529
Am1 3398	-	FhuA	65	gi\|158336534
Am1 3403	Fiu	FhuA	62	gi\|158336539
Ava_B0148	FhuE	FhuA	89	gi\|75812430	Anabaena variabilis ATCC 29413
Ava_B0150	CirA	FhuA	88	gi\|75812432
Ava_B0159	BtuB	FhuA	82	gi\|75812441
Ava_B0185	CirA	ViuA	46	gi\|75812467
Ava_B0217	Fiu	BtuB	23	gi\|75812499
Ava_B0218	CirA	IutA	42	gi\|75812500
Ava_C0010	FhuE	BtuB	27	gi\|75812671
Ava_1672	CirA	ViuA	47	gi\|75907894
Ava_2840	CirA	FhuA	83	gi\|75909052
Ava_4967	BtuB	FhuA	84	gi\|75911163
cce3039	CirA	FhuA	54	gi\|172037952	Cyanothece sp. CCY0110
glr0280	CirA	?	7	gi\|37519849	Gloeobacter violaceus PCC7421
gll0302	CirA	IutA	41	gi\|37519871
gll0311	-	FhuA	81	gi\|37519880
gll0313	-	FhuA	56	gi\|37519882
gll0319	-	FhuA	63	gi\|37519888
glr0327	CirA	ViuA	48	gi\|37519896
gll0331	FecA	FhuA	69	gi\|37519900
gll0343	CirA	IutA	36	gi\|37519912
glr0349	FhuE	FhuA	95	gi\|37519918
glr0353	-	FhuA	76	gi\|37519922
gll0361	FhuE	FhuA	78	gi\|37519930
gll0896	FepA	BtuB	22	gi\|37520465
gll1276	OMC	BtuB	20	gi\|37520845
glr1304	OMC	BtuB	17	gi\|37520873
glr1380	-	-	-	gi\|37520949
glr1385	-	BtuB	18	gi\|37520954
glr1386	CirA	BtuB	15	gi\|37520955
gll1452	BtuB	BtuB	25	gi\|37521021
glr1488	-	BtuB	12	gi\|37521057
glr1610	-	?	8	gi\|37521179
glr1909	FhuE	FhuA	73	gi\|37521478
gll1962	-	BtuB	16	gi\|37521531
glr1973	BtuB	BtuB	29	gi\|37521542
gll1978	Fiu	FhuA	93	gi\|37521547
glr2051	FepA	?	10	gi\|37521620
glr2116	BtuB	BtuB	24	gi\|37521685
gll3103	BtuB	BtuB	11	gi\|37522672
glr3352	OMC^a	BtuB	19	gi\|37522921
gll3601	BtuB	BtuB	14	gi\|37523170
gll3680	BtuB	?	9	gi\|37523249
gll3974	FhuE	FhuA	77	gi\|37523543
gll3976	CirA	FhuA	75	gi\|37523545
glr4296	CirA	BtuB	13	gi\|37523865
NpunF1172	-	BtuB	33	gi\|186681644	Nostoc punctiforme PCC73102
NpunF3454	-	FhuA	94	gi\|186683610
all1101	-	FhuA	52	gi\|17228596	Anabaena sp. PCC 7120
all2148	FhuE	FhuA	66	gi\|17229640
all2158	FhuE	FhuA	53	gi\|17229650
all2236	Fiu	FhuA	87	gi\|17229728
all2610	CirA	FhuA	67	gi\|17230102
all2674	Fiu	FhuA	70	gi\|17230166
all3310	BtuB	BtuB	21	gi\|17230802
all4026	CirA	ViuA	45	gi\|17231518
all4924	FhuE	FhuA	61	gi\|17232416
alr0397	CirA	IutA	40	gi\|17227893
alr2153	CirA	HutA	4	gi\|17229645
alr2175	-	FhuA	69	gi\|17229667
alr2185	Fiu	FhuA	51	gi\|17229677
alr2209	CirA	IutA	44	gi\|17229701
alr2211	CirA	FhuA	90	gi\|17229703
alr2581	CirA	IutA	43	gi\|17230073
alr2588	CirA	FhuA	74	gi\|17230080
alr2592	FhuE	FhuA	91	gi\|17230084
alr2596	FhuE	FhuA	64	gi\|17230088
alr2626	-	FhuA	79	gi\|17230118
alr3242	CirA	HutA	5	gi\|17230734
alr4028 +alr4029	-	BtuB	32	gi\|17231520 gi\|17231521
sll1206	IutA	IutA	39	gi\|16329186	Synechocystis sp. PCC6803
sll1409	FhuA	FhuA	80	gi\|16329191
sll1406	FhuA	FhuA	85	gi\|16329194
slr1490	FhuA	FhuA	68	gi\|16329201
CYA_1108	BtuB	BtuB	31	gi\|86605797	Synechococcus sp. JA-3-3Ab
CYA_2031	CirA	HutA	1	gi\|86606671
CYB_1330	BtuB	BtuB	28	gi\|86608804	Synechococcus sp. JA-2-3B'a(2-13)
CYB_2727	CirA	HutA	2	gi\|86610153
SynpA0637	BtuB	BtuB	30	gi\|170077260	Synechococcus sp. PCC 7002
SynpG0081	CirA	HutA	6	gi\|170076551
SynpG0006	CirA	IutA	35	gi\|170076476
SynpG0138	CirA	IutA	37	gi\|170076608
SynPG0089	FhuE	FhuA	55	gi\|170076568
SynpG0103	FhuA	FhuA	86	gi\|170076573
Nspu20875	CirA	FhuA	92	gi\|119508873	Nodularia spumigena CCY9414
Nspu21611	CirA	IutA	43	gi\|119509643
Cwat6206*	-	FhuA	1	gi\|67920343	Crocosphaera watsonii WH8501

The annotation of the sequences is indicated in column 1, the spot number according to Figure 3 is indicated in column 4; the initial annotation in the database is given in column 2; the classification according to Figure 3 using the name of a representative transporter of the related category is given in column 3; the accession code in column 5; and the source organism column 6.
^a(OMC, outer membrane channel; '*', incomplete sequence; '?', no clear assignment possible).

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