Skip to main content

Table 1 Sequences used for the phylogenetic analysis of cyanobacteria

From: TonB-dependent transporters and their occurrence in cyanobacteria

Code Old New Spot Database code Species
Am1 B0127 BtuB BtuB 26 gi|158339996 Acaryochloris marina MBIC11017
Am1 3407 CirA HutA 3 gi|158336543  
Am1 3358 CirA IutA 38 gi|158336494  
Am1 A0170 CirA ViuA 50 gi|158339820  
Am1 3383 CirA ViuA 49 gi|158336519  
Am1 A0184 Fiu FhuA 58 gi|158339834  
Am1 A0274 FhuE FhuA 57 gi|158339535  
Am1 A0198 - FhuA 71 gi|158339845  
Am1 A0157 FhuE FhuA 59 gi|158339807  
Am1 3393 FhuE FhuA 72 gi|158336529  
Am1 3398 - FhuA 65 gi|158336534  
Am1 3403 Fiu FhuA 62 gi|158336539  
Ava_B0148 FhuE FhuA 89 gi|75812430 Anabaena variabilis ATCC 29413
Ava_B0150 CirA FhuA 88 gi|75812432  
Ava_B0159 BtuB FhuA 82 gi|75812441  
Ava_B0185 CirA ViuA 46 gi|75812467  
Ava_B0217 Fiu BtuB 23 gi|75812499  
Ava_B0218 CirA IutA 42 gi|75812500  
Ava_C0010 FhuE BtuB 27 gi|75812671  
Ava_1672 CirA ViuA 47 gi|75907894  
Ava_2840 CirA FhuA 83 gi|75909052  
Ava_4967 BtuB FhuA 84 gi|75911163  
cce3039 CirA FhuA 54 gi|172037952 Cyanothece sp. CCY0110
glr0280 CirA ? 7 gi|37519849 Gloeobacter violaceus PCC7421
gll0302 CirA IutA 41 gi|37519871  
gll0311 - FhuA 81 gi|37519880  
gll0313 - FhuA 56 gi|37519882  
gll0319 - FhuA 63 gi|37519888  
glr0327 CirA ViuA 48 gi|37519896  
gll0331 FecA FhuA 69 gi|37519900  
gll0343 CirA IutA 36 gi|37519912  
glr0349 FhuE FhuA 95 gi|37519918  
glr0353 - FhuA 76 gi|37519922  
gll0361 FhuE FhuA 78 gi|37519930  
gll0896 FepA BtuB 22 gi|37520465  
gll1276 OMC BtuB 20 gi|37520845  
glr1304 OMC BtuB 17 gi|37520873  
glr1380 - - - gi|37520949  
glr1385 - BtuB 18 gi|37520954  
glr1386 CirA BtuB 15 gi|37520955  
gll1452 BtuB BtuB 25 gi|37521021  
glr1488 - BtuB 12 gi|37521057  
glr1610 - ? 8 gi|37521179  
glr1909 FhuE FhuA 73 gi|37521478  
gll1962 - BtuB 16 gi|37521531  
glr1973 BtuB BtuB 29 gi|37521542  
gll1978 Fiu FhuA 93 gi|37521547  
glr2051 FepA ? 10 gi|37521620  
glr2116 BtuB BtuB 24 gi|37521685  
gll3103 BtuB BtuB 11 gi|37522672  
glr3352 OMCa BtuB 19 gi|37522921  
gll3601 BtuB BtuB 14 gi|37523170  
gll3680 BtuB ? 9 gi|37523249  
gll3974 FhuE FhuA 77 gi|37523543  
gll3976 CirA FhuA 75 gi|37523545  
glr4296 CirA BtuB 13 gi|37523865  
NpunF1172 - BtuB 33 gi|186681644 Nostoc punctiforme PCC73102
NpunF3454 - FhuA 94 gi|186683610  
all1101 - FhuA 52 gi|17228596 Anabaena sp. PCC 7120
all2148 FhuE FhuA 66 gi|17229640  
all2158 FhuE FhuA 53 gi|17229650  
all2236 Fiu FhuA 87 gi|17229728  
all2610 CirA FhuA 67 gi|17230102  
all2674 Fiu FhuA 70 gi|17230166  
all3310 BtuB BtuB 21 gi|17230802  
all4026 CirA ViuA 45 gi|17231518  
all4924 FhuE FhuA 61 gi|17232416  
alr0397 CirA IutA 40 gi|17227893  
alr2153 CirA HutA 4 gi|17229645  
alr2175 - FhuA 69 gi|17229667  
alr2185 Fiu FhuA 51 gi|17229677  
alr2209 CirA IutA 44 gi|17229701  
alr2211 CirA FhuA 90 gi|17229703  
alr2581 CirA IutA 43 gi|17230073  
alr2588 CirA FhuA 74 gi|17230080  
alr2592 FhuE FhuA 91 gi|17230084  
alr2596 FhuE FhuA 64 gi|17230088  
alr2626 - FhuA 79 gi|17230118  
alr3242 CirA HutA 5 gi|17230734  
alr4028
+alr4029
- BtuB 32 gi|17231520
gi|17231521
 
sll1206 IutA IutA 39 gi|16329186 Synechocystis sp. PCC6803
sll1409 FhuA FhuA 80 gi|16329191  
sll1406 FhuA FhuA 85 gi|16329194  
slr1490 FhuA FhuA 68 gi|16329201  
CYA_1108 BtuB BtuB 31 gi|86605797 Synechococcus sp.
JA-3-3Ab
CYA_2031 CirA HutA 1 gi|86606671  
CYB_1330 BtuB BtuB 28 gi|86608804 Synechococcus sp.
JA-2-3B'a(2-13)
CYB_2727 CirA HutA 2 gi|86610153  
SynpA0637 BtuB BtuB 30 gi|170077260 Synechococcus sp. PCC 7002
SynpG0081 CirA HutA 6 gi|170076551  
SynpG0006 CirA IutA 35 gi|170076476  
SynpG0138 CirA IutA 37 gi|170076608  
SynPG0089 FhuE FhuA 55 gi|170076568  
SynpG0103 FhuA FhuA 86 gi|170076573  
Nspu20875 CirA FhuA 92 gi|119508873 Nodularia spumigena
CCY9414
Nspu21611 CirA IutA 43 gi|119509643  
Cwat6206* - FhuA 1 gi|67920343 Crocosphaera watsonii WH8501
  1. The annotation of the sequences is indicated in column 1, the spot number according to Figure 3 is indicated in column 4; the initial annotation in the database is given in column 2; the classification according to Figure 3 using the name of a representative transporter of the related category is given in column 3; the accession code in column 5; and the source organism column 6.
  2. a(OMC, outer membrane channel; '*', incomplete sequence; '?', no clear assignment possible).