A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish

Table 3 Results of LRT for positive selection

Region¹	Model²	2 Δ lnL	p-value	No sites
B30.2 complete	PAML M1a-M2a	208.21	p < 0.001	16
	PAML M7–M8	231.62	p < 0.001	21
B30.2 complete	PARRIS M1a-M2a	29.38	p < 0.001	ND
B30.2 1–285	PAML M1a-M2a	124.15	p < 0.001	13
	PAML M7–M8	129.55	p < 0.001	14
B30.2 286–485	PAML M1a-M2a	41.33	p < 0.001	3
	PAML M7–M8	47.95	p < 0.001	3
RBB complete	PAML M1a-M2a	25.25	p < 0.001	4
	PAML M7–M8	18.20	p < 0.001	2
RBB complete	PARRIS M1a-M2a	20.95	p < 0.001	ND
RBB 1–234	PAML M1a-M2a	21.04	p < 0.001	3
	PAML M7–M8	17.94	p < 0.001	3
RBB 238–465	PAML M1a-M2a	3.73	p = 0.155	0
	PAML M7–M8	1.57	p = 0.455	0

¹ For fragmented regions, numbers correspond with positions of first and last nucleotides in the alignment.
² The models M1a, M2a, M7 and M8 were employed, using either the program PAML or program PARRIS.

ISSN: 1741-7007