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Table 2 Major phylogenetic distribution of 16S rRNA gene sequences and phylotypes from treatment groups.

From: Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces

Phylum

Bacterial taxa

IN

OUT

IR

INS

OUTS

% Bacteroidetes

 

3.72

1.08

20.97

26.44

13.70

 

Prevotellaceae (%)

2.91

0.54

18.79

10.09

4.83

 

Bacteroidaceae (%)

0.40

0

0.76

4.08

0

 

Porphyromonadaceae (%)

0

0.40

0.63

3.84

8.87

% Proteobacteria

 

28.26

4.63

24.04

12.25

0

 

α-proteobacteria (%)

0

0.13

0

0

0

 

β-proteobacteria (%)

0.20

0

0.1

0.24

0

 

γ-proteobacteria (%)

15.19

3.81

23.91

11.53

0

 

Pasteurellaceae (%)

14.78

2.17

2.55

0

0

 

Enterobacteriaceae (%)

0.4

1.36

20.7

0.24

0

 

Pseudomonadaceae (%)

0

0

0

4.08

0

 

Moraxellaceae (%)

0

0

0.63

6.25

0

 

ε-proteobacteria (%)

12.97

0.4

0

0.48

0

 

Helicobacteraceae (%)

10.46

0.4

0

0

0

 

Campylobacteraceae (%)

2.61

0

0

0.48

0

% Firmicutes

 

66.29

94.0

54.21

73.55

83.06

 

Erysipelotrichi (%)

0.90

0

0.12

0.72

0

 

Bacilli (%)

18.81

81.8

3.70

19.95

49.18

 

Order Bacillales (%)

0.2

0.2

0.12

5.28

0

 

Order Lactobacillales (%)

18.6

81.6

3.58

14.42

49.18

 

Clostridia (%)

46.68

12.12

47.69

51.92

33.87

 

Lachnospiraceae (%)

3.52

0.95

8.95

3.84

8.87

 

Veillonellaceae (%)

0

0.4

6.9

1.68

1.61

 

Clostridiaceae (%)

13.17

2.72

1.27

19.95

8.06

 

Peptostreptococcaceae (%)

24.44

7.49

28.9

15.38

2.41

 

Ruminococcaceae (%)

0.90

0.54

6.26

6.97

7.25