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Table 4 GO analysis of differentially expressed genes of animals housed in different environments.

From: Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces

   IR vs OUT IN vs OUT
GO Category GO Term Day 5 Day 28 Day 56 Day 5 Day 28 Day 56
   Genes* P -value Genes* P -value Genes* P -value Genes* P -value Genes* P -value Genes* P -value
GO:0019882 Antigen processing and presentation 62 2.4E-33 28 8.0E-06 26 5.1E-05 25 6.0E-10 26 1.8E-07 26 8.8E-06
GO:0002376 Immune system process 65 3.5E-21 42 4.3E-07 33 0.001 27 1.6E-06 30 5.4E-05 35 2.7E-05
GO:0002474 Antigen processing and presentation of peptide antigen via MHC class I 15 1.6E-08 16 8.6E-10 15 7.8E-09 14 3.0E-11 15 1.5E-10 15 2.2E-09
GO:0048002 Antigen processing and presentation of peptide antigen 15 1.6E-08 16 8.6E-10 15 7.8E-09 14 3.0E-11 15 1.5E-10 15 2.2E-09
GO:0006955 Immune response 54 1.8E-16 31 4.7E-04    16 0.021    24 0.015
GO:0002504 Antigen processing and presentation of peptide or polysaccharide antigen via MHC class II 36 1.5E-17           
GO:0050896 Response to stimulus 57 3.5E-07 41 0.018         
GO:0006412 Translation          13 0.002   
GO:0006807 Nitrogen compound metabolic process    9 0.007 8 0.021       
GO:0030163 Protein catabolic process    5 0.008         
  1. Differentially expressed transcripts (P < 0.05) are shown assigned to the GO-category 'Biological Process'. The top ten GO-categories are shown. The number of transcripts for each function is shown, with the corresponding P-value.
  2. *Genes involved in the specific GO-category