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Table 1 Multiplex tags and read count for sampled accession.

From: Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

Accession Multiplex Tag Number of Reads Read Length
(bp, without tag)
Median coverage
Abies firma AGCT 3110857 36 116
Cedrus deodara CCCT 1338443 36 74
Larix occidentalis GGT 719060 33 30
Picea sitchensis ATT/AATT 1268688/710117 33/37 80
Pinus albicaulis AGCT 869509 36 54
P. aristata ACGT 1884108 36 100
P. armandii AGCT 1233280 36 109
P. attenuata ACGT 1230397 36 64
P. ayacahuite CCCT 1173420 36 96
P. banksiana AGCT 2307302 36 65
P. canariensis CCCT 1069293 36 95
P. cembra CTGT 1166707 36 40
P. contorta CCT 1423631/423905 33/37 65
P. chihuahuana CTGT 950336 36 21
P. flexilis GGGT 1545509 36 136
P. gerardiana GGT 1336725 33 98
P. krempfii AAT 1569301 33 112
P. lambertiana N ATT 1426598/1443555 33/37 99
P. lambertiana S CCCT 1180289 36 113
P. longaeva CCT 930078 33 89
P. merkusii ATT 632411/585832 33/37 37
P. monophylla GGT 1233556 33 145
P. monticola CTGT 1460934 36 75
P. nelsonii AAT 1139491/329838 33/37 81
P. parviflora CCCT 920102 36 45
P. peuce TACT 1402996 36 98
P. pinaster GGT 1745043 33 77
P. ponderosa CCT 16859450 33 44
P. resinosa GGGT 2145134 36 48
P. rzedowskii TACT 2419507 36 156
P. sibirica CTGT 947216 36 60
P. squamata TACT 1956311 36 97
P. strobus GGGT 864197 36 42
P. taeda CGT 1305703/1219158 33/37 90
P. thunbergii AAT 1850050/2690553 33/37 104
P. torreyana ssp. torreyana CTGT 1114111 36 76
P. torreyana ssp. insularis ACGT 1157851 36 88
  1. "/" indicates accession was multiplex sequenced in two sequencing runs. Median coverage is reported for determined positions (≥ 2× coverage depth) in reference-guided analysis.