Table 1 Characteristics of CEACAM1-related genes of analyzed mammalian CEA families
abbreviation | Latin name | common name | clade | fold sequencing coverage | CEACAM1-related genes | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | total | pseudo-genes | GPI-liked members | soluble members | members with ITAM/ITAM-like motif | members with ITIM/ITSM |
Bta | Bos taurus | cattle | laurasiatheria | 7 | 6 | 1 | 0 | 1 | 0/2 | 0/1 |
Cfa | Canis familiaris | dog | laurasiatheria | 7.6 | 9 | 2 | 0 | 0 | 0/4 | 0/1 |
Cpo | Cavia porcellus | Guinea pig | euarchontoglires | 6.8 | 14 | 7 | n.d. | n.d. | 0/1 | 1/1 |
Dno | Dasypus novemcinctus | armadillo | xenarthra | 2 | 10 | 0 | n.d. | 0 | 0/4 | 0/1 |
Eca | Equus caballus | horse | laurasiatheria | 7 | 27 | 13 | 0 | 7 | 0/1 | 0/2 |
Eeu | Erinaceus europaeus | hedgehog | laurasiatheria | 1.9 | 18 | 5 | n.d. | n.d. | n.d | n.d |
Ete | Echinops telfairi | lesser hedgehog tenrec | afrotheria | 2 | 5 | 2 | 0 | n.d. | 0/1 | n.d. |
Fca | Felis catus | cat | laurasiatheria | 1.9 | 3 | 0 | n.d. | n.d. | 0/1 | 0/1 |
Hsa | Homo sapiens | man | euarchontoglires | finished | 29 | 11 | 4 | 10 | 0/2 | 1/0 |
Laf | Loxodonto africana | elephant | afrotheria | 2 | 8 | 0 | n.d. | n.d. | 0/2 | 0/1 |
Mdo | Monodelphis domestica | opossum | marsupialia | 7.3 | 21 | 6 | 0 | 5 | 4/0 | 1/1 |
Meu | Macropus eugenii | tammar wallaby | marsupialia | 2 | 19 | n.d. | n.d. | n.d. | 4/0 | 0/0 |
Mlu | Myotis lucifugus | small brown bat | laurasiatheria | 1.7 | >100 | n.d. | n.d. | n.d. | 0/1 | 1b |
Mml | Macaca mulatta | rhesus macaque | euarchontoglires | 5.2 | 28 | 5 | 4 | 13 | 0/2 | 1/0 |
Mmu | Mus musculus | mouse | euarchontoglires | finished | 28 | 1 | 0 | 24 | 0/0 | 0/2a |
Mmr | Microcebus murinus | gray mouse lemur | euarchontoglires | 2 | 7 | 2 | n.d. | n.d. | 0/1 | 0/1 |
Oan | Ornithorhynchus anatinus | platypus | monotremata | 6 | 5 | 0 | n.d. | n.d. | n.d. | 1/0 |
Ocu | Oryctolagus cuniculus | rabbit | euarchontoglires | 2 | 1 | 0 | 0 | 0 | 0/0 | 0/1 |
Oga | Otolemur garnettii | bush baby | euarchontoglires | 1.5 | 3 | 1 | 1 | 0 | n.d. | 0/1 |
Opr | Ochotona princeps | American pika | euarchontoglires | 1.9 | 2 | 1 | n.d. | n.d. | n.d. | 1b |
Ppy | Pongo pygmaeus | orangutan | euarchontoglires | 7 | 28 | 11 | 4 | 9 | 0/2 | 1/0 |
Ptr | Pan troglodytes | chimpanzee | euarchontoglires | 6 | 27 | 11 | 4 | 9 | 0/2 | 1/0 |
Rno | Rattus norvegicus | rat | euarchontoglires | 11.9 | 18 | 0 | 0 | 14 | 0/0 | 0/1a |
Sar | Sorex araneus | European shrew | laurasiatheria | 1.9 | 3 | 0 | n.d. | n.d. | 0/1 | 1b |
Str | Spermophilus tridecemlineatus | ground squirrel | euarchontoglires | 1.9 | 4 | 1 | n.d. | n.d. | 0/1 | 0/1 |
Ssc | Sus scrofa | pig | laurasiatheria | 4 | 3 | 0 | 1 | 0 | 0/1 | 0/1 |
Tbe | Tupaia belangeri | tree shrew | euarchontoglires | 2 | 5 | 1 | n.d | n.d | 0/1 | 0/1 |