TY - JOUR AU - Wendel, J. F. AU - Cronn, R. C. PY - 2003 DA - 2003// TI - Polyploidy and the evolutionary history of cotton JO - Advances in Agronomy VL - 78 UR - https://doi.org/10.1016/S0065-2113(02)78004-8 DO - 10.1016/S0065-2113(02)78004-8 ID - Wendel2003 ER - TY - JOUR AU - Brubaker, C. AU - Wendel, J. PY - 1994 DA - 1994// TI - Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs) JO - Am J Botany VL - 81 UR - https://doi.org/10.2307/2445407 DO - 10.2307/2445407 ID - Brubaker1994 ER - TY - CHAP AU - Brubaker, C. L. AU - Bourland, F. M. AU - Wendel, J. F. ED - Smith, C. ED - Cothren, J. PY - 1999 DA - 1999// TI - The origin and domestication of cotton BT - Cotton; Origin, History, Technology and Production PB - John Wiley and Sons CY - New York ID - Brubaker1999 ER - TY - JOUR AU - Wendel, J. F. AU - Brubaker, C. L. AU - Percival, A. E. PY - 1992 DA - 1992// TI - Genetic diversity in Gossypium hirsutum and the origin of Upland cotton JO - Am J Botany VL - 79 UR - https://doi.org/10.2307/2445058 DO - 10.2307/2445058 ID - Wendel1992 ER - TY - JOUR AU - Applequist, W. L. AU - Cronn, R. C. AU - Wendel, J. F. PY - 2001 DA - 2001// TI - Comparative development of fiber in wild and cultivated cotton JO - Evol Devel VL - 3 UR - https://doi.org/10.1046/j.1525-142x.2001.00079.x DO - 10.1046/j.1525-142x.2001.00079.x ID - Applequist2001 ER - TY - BOOK AU - Fryxell, P. A. PY - 1979 DA - 1979// TI - The Natural History of The Cotton Tribe PB - Texas A and M University Press CY - Texas ID - Fryxell1979 ER - TY - JOUR AU - Hutchinson, J. B. PY - 1951 DA - 1951// TI - Intra-specific differentiation in Gossypium hirsutum JO - Heredity VL - 5 UR - https://doi.org/10.1038/hdy.1951.19 DO - 10.1038/hdy.1951.19 ID - Hutchinson1951 ER - TY - JOUR AU - Cubas, P. AU - Lauter, N. AU - Doebley, J. AU - Coen, E. PY - 1999 DA - 1999// TI - The TCP domain: a motif found in proteins regulating plant growth and development JO - Plant J VL - 18 UR - https://doi.org/10.1046/j.1365-313X.1999.00444.x DO - 10.1046/j.1365-313X.1999.00444.x ID - Cubas1999 ER - TY - JOUR AU - Burger, J. C. AU - Chapman, M. A. AU - Burke, J. M. PY - 2008 DA - 2008// TI - Molecular insights into the evolution of crop plants JO - Am J Botany VL - 95 UR - https://doi.org/10.3732/ajb.95.2.113 DO - 10.3732/ajb.95.2.113 ID - Burger2008 ER - TY - JOUR AU - Burke, J. M. AU - Burger, J. C. AU - Chapman, M. A. PY - 2007 DA - 2007// TI - Crop evolution: from genetics to genomics JO - Cur Opin Genet Devel VL - 17 UR - https://doi.org/10.1016/j.gde.2007.09.003 DO - 10.1016/j.gde.2007.09.003 ID - Burke2007 ER - TY - JOUR AU - Doebley, J. F. AU - Gaut, B. S. AU - Smith, B. D. PY - 2006 DA - 2006// TI - The molecular genetics of crop domestication JO - Cell VL - 127 UR - https://doi.org/10.1016/j.cell.2006.12.006 DO - 10.1016/j.cell.2006.12.006 ID - Doebley2006 ER - TY - JOUR AU - Sweeney, M. T. AU - Thomson, M. J. AU - Pfeil, B. E. AU - McCouch, S. PY - 2006 DA - 2006// TI - Caught red-Handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.038430 DO - 10.1105/tpc.105.038430 ID - Sweeney2006 ER - TY - JOUR AU - Clark, R. M. AU - Wagler, T. N. AU - Quijada, P. AU - Doebley, J. F. PY - 2006 DA - 2006// TI - A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture JO - Nature Genetics VL - 38 UR - https://doi.org/10.1038/ng1784 DO - 10.1038/ng1784 ID - Clark2006 ER - TY - JOUR AU - Wang, H. AU - Nussbaum-Wagler, T. AU - Li, B. AU - Zhao, Q. AU - Vigouroux, Y. AU - Faller, M. AU - Bomblies, K. AU - Lukens, L. AU - Doebley, J. F. PY - 2005 DA - 2005// TI - The origin of the naked grains of maize JO - Nature VL - 436 UR - https://doi.org/10.1038/nature03863 DO - 10.1038/nature03863 ID - Wang2005 ER - TY - JOUR AU - Dreher, K. A. AU - Brown, J. AU - Saw, R. E. AU - Callis, J. PY - 2006 DA - 2006// TI - The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.039172 DO - 10.1105/tpc.105.039172 ID - Dreher2006 ER - TY - JOUR AU - Frary, A. AU - Nesbitt, T. C. AU - Grandillo, S. AU - Knaap, E. v. d. AU - Cong, B. AU - Liu, J. P. AU - Meller, J. AU - Elbert, R. AU - Alpert, K. B. AU - Tanksley, S. D. PY - 2000 DA - 2000// TI - fw2.2: A quantitative trait locus key to the evolution of tomato fruit size JO - Science VL - 289 UR - https://doi.org/10.1126/science.289.5476.85 DO - 10.1126/science.289.5476.85 ID - Frary2000 ER - TY - JOUR AU - Chaudhary, B. AU - Hovav, R. AU - Flagel, L. AU - Mittler, R. AU - Wendel, J. F. PY - 2009 DA - 2009// TI - Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium) JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-378 DO - 10.1186/1471-2164-10-378 ID - Chaudhary2009 ER - TY - JOUR AU - Hovav, R. AU - Udall, J. A. AU - Hovav, E. AU - Rapp, R. AU - Flagel, L. PY - 2008 DA - 2008// TI - A majority of cotton genes are expressed in single-celled fiber JO - Planta VL - 227 UR - https://doi.org/10.1007/s00425-007-0619-7 DO - 10.1007/s00425-007-0619-7 ID - Hovav2008 ER - TY - JOUR AU - Hovav, R. AU - Udall, J. A. AU - Chaudhary, B. AU - Hovav, E. AU - Flagel, L. AU - Hu, G. AU - Wendel, J. PY - 2008 DA - 2008// TI - The evolution of spinable cotton fiber entailed natural selection for prolonged development and a novel metabolism JO - PLoS Genetics VL - 4 UR - https://doi.org/10.1371/journal.pgen.0040025 DO - 10.1371/journal.pgen.0040025 ID - Hovav2008 ER - TY - JOUR AU - Chaudhary, B. AU - Hovav, R. AU - Rapp, R. A. AU - Verma, N. AU - Udall, J. A. AU - Wendel, J. F. PY - 2008 DA - 2008// TI - Global analysis of gene expression in cotton fibers from wild and domesticated (Gossypium barbadense) JO - Evol Devel VL - 10 UR - https://doi.org/10.1111/j.1525-142X.2008.00272.x DO - 10.1111/j.1525-142X.2008.00272.x ID - Chaudhary2008 ER - TY - JOUR AU - Arpat, A. B. AU - Waugh, M. AU - Sullivan, J. P. AU - Gonzales, M. AU - Frisch, D. AU - Main, D. AU - Wood, T. AU - Leslie, A. AU - Wing, R. A. AU - Wilkins, T. A. PY - 2004 DA - 2004// TI - Functional genomics of cell elongation in developing cotton fibers JO - Plant Molec Biol VL - 54 UR - https://doi.org/10.1007/s11103-004-0392-y DO - 10.1007/s11103-004-0392-y ID - Arpat2004 ER - TY - JOUR AU - Wilkins, T. A. AU - Arpat, A. B. PY - 2005 DA - 2005// TI - The cotton fiber transcriptome JO - Physiologia Plantarum VL - 124 UR - https://doi.org/10.1111/j.1399-3054.2005.00514.x DO - 10.1111/j.1399-3054.2005.00514.x ID - Wilkins2005 ER - TY - JOUR AU - Laan, M. J. v. d. AU - Pollard, K. S. AU - Bryan, J. PY - 2003 DA - 2003// TI - A new partitioning around medoids algorithm JO - J Stat Comp Sim VL - 73 UR - https://doi.org/10.1080/0094965031000136012 DO - 10.1080/0094965031000136012 ID - Laan2003 ER - TY - JOUR AU - Tiwari, S. C. AU - Wilkins, T. A. PY - 1995 DA - 1995// TI - Cotton (Gossypium hirsutum) seed trichomes expand via a diffuse growing mechanism JO - Can J Botany VL - 73 UR - https://doi.org/10.1139/b95-081 DO - 10.1139/b95-081 ID - Tiwari1995 ER - TY - JOUR AU - Kim, H. J. AU - Triplett, B. A. PY - 2001 DA - 2001// TI - Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis JO - Plant Physiology VL - 127 UR - https://doi.org/10.1104/pp.010724 DO - 10.1104/pp.010724 ID - Kim2001 ER - TY - JOUR AU - Betancur, L. AU - Singh, B. AU - Rapp, R. A. AU - Wendel, J. F. AU - Marks, M. D. AU - Roberts, A. W. AU - Haigler, C. H. PY - 2010 DA - 2010// TI - Phylogenetically distinct cellulose synthase genes support secondary wall thickening in Arabidopsis shoot trichomes and cotton fiber JO - J Integrative Plant Biol VL - 52 UR - https://doi.org/10.1111/j.1744-7909.2010.00934.x DO - 10.1111/j.1744-7909.2010.00934.x ID - Betancur2010 ER - TY - JOUR AU - Wang, R. L. AU - Stec, A. AU - Hey, J. AU - Lukens, L. AU - Doebley, J. F. PY - 1999 DA - 1999// TI - The limits of selection during maize domestication JO - Nature VL - 398 UR - https://doi.org/10.1038/18435 DO - 10.1038/18435 ID - Wang1999 ER - TY - JOUR AU - Stupar, R. M. AU - Springer, N. M. PY - 2006 DA - 2006// TI - Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.106.060699 DO - 10.1534/genetics.106.060699 ID - Stupar2006 ER - TY - JOUR AU - Lai, Z. AU - Kane, N. C. AU - Zou, Y. AU - Rieseberg, L. H. PY - 2008 DA - 2008// TI - Natural variation in gene expression between wild and weedy populations of Helianthus annuus JO - Genetics VL - 179 UR - https://doi.org/10.1534/genetics.108.091041 DO - 10.1534/genetics.108.091041 ID - Lai2008 ER - TY - JOUR AU - Hegarty, M. J. AU - Barker, G. L. AU - Brennan, A. C. AU - Edwards, K. J. AU - Abbott, R. J. AU - Hiscock, S. J. PY - 2009 DA - 2009// TI - Extreme changes to gene expression associated with homoploid hybrid speciation JO - Molec Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2008.04054.x DO - 10.1111/j.1365-294X.2008.04054.x ID - Hegarty2009 ER - TY - JOUR AU - Chelaifa, H. AU - Monnier, A. AU - Ainouche, M. PY - 2010 DA - 2010// TI - Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina × townsendii and Spartina anglica (Poaceae) JO - New Phytol VL - 186 UR - https://doi.org/10.1111/j.1469-8137.2010.03179.x DO - 10.1111/j.1469-8137.2010.03179.x ID - Chelaifa2010 ER - TY - JOUR AU - Voelckel, C. AU - Heenan, P. B. AU - Janssen, B. AU - Reichelt, M. AU - Ford, K. AU - Hofmann, R. AU - Lockhart, P. J. PY - 2008 DA - 2008// TI - Transcriptional and biochemical signatures of divergence in natural populations of two species of New Zealand alpine Pachycladon JO - Molec Ecol VL - 17 UR - https://doi.org/10.1111/j.1365-294X.2008.03933.x DO - 10.1111/j.1365-294X.2008.03933.x ID - Voelckel2008 ER - TY - JOUR AU - Demura, T. AU - Ye, Z. -. H. PY - 2010 DA - 2010// TI - Regulation of plant biomass production JO - Cur Opin Plant Biol VL - 13 UR - https://doi.org/10.1016/j.pbi.2010.03.002 DO - 10.1016/j.pbi.2010.03.002 ID - Demura2010 ER - TY - CHAP AU - Zhong, R. AU - Lee, C. AU - Ye, Z. -. H. PY - 2010 DA - 2010// TI - Evolutionary conservation of the transcriptional network regulating secondary wall biosynthesis BT - Trends Plant Sci ID - Zhong2010 ER - TY - CHAP AU - Haigler, C. AU - Singh, B. AU - Wang, G. AU - Zhang, D. ED - Patterson, A. H. PY - 2009 DA - 2009// TI - Genomics of cotton fiber secondary wall deposition and cellulose biogenesis BT - Genetics and Genomics of Cotton, Plant Genetics and Genomics: Crops and Models 3 PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-70810-2_16 DO - 10.1007/978-0-387-70810-2_16 ID - Haigler2009 ER - TY - JOUR AU - Paradez, A. AU - Wright, A. AU - Ehrhardt, D. W. PY - 2006 DA - 2006// TI - Microtublule cortical array organization and plant cell morphogenesis JO - Cur Opin Plant Biol VL - 9 UR - https://doi.org/10.1016/j.pbi.2006.09.005 DO - 10.1016/j.pbi.2006.09.005 ID - Paradez2006 ER - TY - JOUR AU - Zonia, L. AU - Munnik, T. PY - 2007 DA - 2007// TI - Life under pressure: hydrostatic pressure in cell growth and function JO - Trends Plant Sci VL - 12 UR - https://doi.org/10.1016/j.tplants.2007.01.006 DO - 10.1016/j.tplants.2007.01.006 ID - Zonia2007 ER - TY - JOUR AU - Vidali, L. AU - Augustine, R. C. AU - Kleinman, K. P. AU - Bezanilla, M. PY - 2007 DA - 2007// TI - Profilin is essential for tip growth in the moss Physcomitrella patens JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.107.053413 DO - 10.1105/tpc.107.053413 ID - Vidali2007 ER - TY - JOUR AU - Hussey, P. J. AU - Ketelaar, T. AU - Deeks, M. PY - 2006 DA - 2006// TI - Control of the actin cytoskeleton in plant cell growth JO - Ann Rev Plant Cell Biol VL - 57 UR - https://doi.org/10.1146/annurev.arplant.57.032905.105206 DO - 10.1146/annurev.arplant.57.032905.105206 ID - Hussey2006 ER - TY - JOUR AU - Wang, H. Y. AU - Yu, Y. AU - Chen, Z. L. AU - Xia, G. X. PY - 2005 DA - 2005// TI - Functional characterization of Gossypium hirsutum profilin 1 gene (GhPFN1) in tobacco suspension cells. Characterization of in vivo functions of a cotton profilin gene JO - Planta VL - 222 UR - https://doi.org/10.1007/s00425-005-0005-2 DO - 10.1007/s00425-005-0005-2 ID - Wang2005 ER - TY - JOUR AU - Wang, J. AU - Wang, H. Y. AU - Zhao, P. M. AU - Han, L. B. AU - Jiao, G. L. AU - Zheng, Y. Y. AU - Huang, S. J. AU - Xia, G. X. PY - 2010 DA - 2010// TI - Overexpression of a profilin (GhPFN2) promotes the progression of developmental phases in cotton fibers JO - Plant Cell Physiol VL - 51 UR - https://doi.org/10.1093/pcp/pcq086 DO - 10.1093/pcp/pcq086 ID - Wang2010 ER - TY - JOUR AU - Sullivan, K. F. PY - 1988 DA - 1988// TI - Structure and utilization of tubulin isotypes JO - Ann Rev Cell Biol VL - 4 UR - https://doi.org/10.1146/annurev.cb.04.110188.003351 DO - 10.1146/annurev.cb.04.110188.003351 ID - Sullivan1988 ER - TY - JOUR AU - Meinert, M. C. AU - Delmer, D. P. PY - 1977 DA - 1977// TI - Changes in biochemical composition of the cell wall of the cotton fiber during development JO - Plant Physiol VL - 59 UR - https://doi.org/10.1104/pp.59.6.1088 DO - 10.1104/pp.59.6.1088 ID - Meinert1977 ER - TY - JOUR AU - Rose, J. K. AU - Braam, J. AU - Fry, S. C. AU - Nishitani, K. PY - 2002 DA - 2002// TI - The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature JO - Plant Cell Physiol VL - 43 UR - https://doi.org/10.1093/pcp/pcf171 DO - 10.1093/pcp/pcf171 ID - Rose2002 ER - TY - JOUR AU - Singh, B. AU - Avci, U. AU - Eichler Inwood, S. E. AU - Grimson, M. J. AU - Landgraf, J. AU - Mohnen, D. AU - Sorensen, I. AU - Wilkerson, C. G. AU - Willats, W. G. AU - Haigler, C. H. PY - 2009 DA - 2009// TI - A specialized outer layer of the primary cell wall joins elongating cotton fibers into tissue-like bundles JO - Plant Physiol VL - 150 UR - https://doi.org/10.1104/pp.109.135459 DO - 10.1104/pp.109.135459 ID - Singh2009 ER - TY - JOUR AU - Singh, B. AU - Cheek, H. D. AU - Haigler, C. H. PY - 2009 DA - 2009// TI - A synthetic auxin (NAA) suppresses secondary wall cellulose synthesis and enhances elongation in cultured cotton fiber JO - Plant Cell Reporter VL - 28 UR - https://doi.org/10.1007/s00299-009-0714-2 DO - 10.1007/s00299-009-0714-2 ID - Singh2009 ER - TY - JOUR AU - Takahashi, N. AU - Nakazawa, M. AU - Shibata, K. AU - Yokota, T. AU - Ishikawa, A. AU - Suzuki, K. AU - Kawashima, M. AU - Ichikawa, T. AU - Shimada, H. AU - Matsui, M. PY - 2005 DA - 2005// TI - shk1-D, a dwarf Arabidopsis mutant caused by activation of the CYP72C1 gene, has altered brassinosteroid levels JO - Plant J VL - 42 UR - https://doi.org/10.1111/j.1365-313X.2005.02357.x DO - 10.1111/j.1365-313X.2005.02357.x ID - Takahashi2005 ER - TY - JOUR AU - Thornton, L. E. AU - Rupasinghe, S. G. AU - Peng, H. AU - Schuler, M. A. AU - Neff, M. M. PY - 2010 DA - 2010// TI - Arabidopsis CYP72C1 is an atypical cytochrome P450 that inactivates brassinosteroids JO - Plant Molec Biol VL - 74 UR - https://doi.org/10.1007/s11103-010-9663-y DO - 10.1007/s11103-010-9663-y ID - Thornton2010 ER - TY - JOUR AU - Sun, Y. AU - Veerabomma, S. AU - Abdel-Mageed, H. A. AU - Fokar, M. AU - Asami, T. AU - Yoshida, S. AU - Allen, R. D. PY - 2005 DA - 2005// TI - Brassinosteroid regulates fiber development on cultured cotton ovules JO - Plant Cell Physiol VL - 46 UR - https://doi.org/10.1093/pcp/pci150 DO - 10.1093/pcp/pci150 ID - Sun2005 ER - TY - JOUR AU - Kurasawa, K. AU - Matsui, A. AU - Yokoyama, R. AU - Kuriyama, T. AU - Yoshizumi, T. AU - Matsui, M. AU - Suwabe, K. AU - Watanabe, M. AU - Nishitani, K. PY - 2009 DA - 2009// TI - The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana JO - Plant Cell Physiol VL - 50 UR - https://doi.org/10.1093/pcp/pcp003 DO - 10.1093/pcp/pcp003 ID - Kurasawa2009 ER - TY - JOUR AU - Miura, K. AU - Lee, J. AU - Miura, T. AU - Hasegawa, P. M. PY - 2010 DA - 2010// TI - SIZ1 controls cell growth and plant development in Arabidopsis through salicylic acid JO - Plant Cell Physiol VL - 51 UR - https://doi.org/10.1093/pcp/pcp171 DO - 10.1093/pcp/pcp171 ID - Miura2010 ER - TY - JOUR AU - Vasiliou, V. AU - Pappa, A. AU - Petersen, D. R. PY - 2000 DA - 2000// TI - Role of aldehyde dehydrogenases in endogenous and xenobiotic metabolism JO - Chem-Biol Interact VL - 129 UR - https://doi.org/10.1016/S0009-2797(00)00211-8 DO - 10.1016/S0009-2797(00)00211-8 ID - Vasiliou2000 ER - TY - JOUR AU - Kotchoni, S. O. AU - Kuhns, C. AU - Ditzer, A. AU - Kirch, H. AU - Bartels, D. PY - 2006 DA - 2006// TI - Over-expression of different aldehyde dehydrogenase genes in Arabidopsis thaliana confers tolerance to abiotic stress and protects plants against lipid peroxidation and oxidative stress JO - Plant Cell Environ VL - 29 UR - https://doi.org/10.1111/j.1365-3040.2005.01458.x DO - 10.1111/j.1365-3040.2005.01458.x ID - Kotchoni2006 ER - TY - JOUR AU - Ishikawa, T. AU - Shigeoka, S. PY - 2008 DA - 2008// TI - Recent advances in ascorbate biosynthesis and the physiological significance of ascorbate peroxidase in photosynthesizing organisms JO - Biosci Biotech Bioch VL - 72 UR - https://doi.org/10.1271/bbb.80062 DO - 10.1271/bbb.80062 ID - Ishikawa2008 ER - TY - JOUR AU - Narendra, S. AU - Venkataramani, S. AU - Shen, G. X. AU - Wang, J. AU - Pasapula, V. AU - Lin, Y. AU - Kornyeyev, D. AU - Holaday, A. S. AU - Zhang, H. PY - 2006 DA - 2006// TI - The Arabidopsis ascorbate peroxidase 3 is a peroxisomal membrane-bound antioxidant enzyme and is dispensable for Arabidopsis growth and development JO - J Exp Bot VL - 57 UR - https://doi.org/10.1093/jxb/erl060 DO - 10.1093/jxb/erl060 ID - Narendra2006 ER - TY - JOUR AU - Edwards, R. AU - Dixona, D. P. AU - Walbot, V. PY - 2000 DA - 2000// TI - Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health JO - Trends Plant Sci VL - 5 UR - https://doi.org/10.1016/S1360-1385(00)01601-0 DO - 10.1016/S1360-1385(00)01601-0 ID - Edwards2000 ER - TY - JOUR AU - Endler, A. AU - Meyer, S. AU - Schelbert, S. AU - Schneider, T. AU - Weschke, W. AU - Peters, S. W. AU - Keller, F. AU - Baginsky, S. AU - Martinoia, E. AU - Schmidt, U. G. PY - 2006 DA - 2006// TI - Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach JO - Plant Physiol VL - 141 UR - https://doi.org/10.1104/pp.106.079533 DO - 10.1104/pp.106.079533 ID - Endler2006 ER - TY - JOUR AU - Hoth, S. AU - Niedermeier, M. AU - Feuerstein, A. AU - Hornig, J. AU - Sauer, N. PY - 2010 DA - 2010// TI - An ABA-responsive element in the AtSUC1 promoter is involved in the regulation of AtSUC1 expression JO - Planta VL - 232 UR - https://doi.org/10.1007/s00425-010-1228-4 DO - 10.1007/s00425-010-1228-4 ID - Hoth2010 ER - TY - JOUR AU - Ruan, Y. -. L. AU - Llewellyn, D. J. AU - Furbank, R. T. AU - Chourey, P. S. PY - 2005 DA - 2005// TI - The delayed initiation and slow elongation of fuzz-like short fibre cells in relation to altered patterns of sucrose synthase expression and plasmodesmata gating in a lintless mutant of cotton JO - J Exp Bot VL - 56 UR - https://doi.org/10.1093/jxb/eri091 DO - 10.1093/jxb/eri091 ID - Ruan2005 ER - TY - JOUR AU - Fotopoulos, V. AU - Gilbert, M. J. AU - Pittman, J. K. AU - Marvier, A. C. AU - Buchanan, A. J. AU - Sauer, N. AU - Hall, J. L. AU - Williams, L. E. PY - 2003 DA - 2003// TI - The monosaccharide transporter gene, AtSTP4, and the cell-wall invertase, Atbetafruct1, are induced in Arabidopsis during infection with the fungal biotroph Erysiphe cichoracearum JO - Plant Physiol VL - 132 UR - https://doi.org/10.1104/pp.103.021428 DO - 10.1104/pp.103.021428 ID - Fotopoulos2003 ER - TY - JOUR AU - Mahalingam, R. AU - Shah, N. AU - Scrymgeour, A. AU - Fedoroff, N. PY - 2005 DA - 2005// TI - Temporal evolution of the Arabidopsis oxidative stress response JO - Plant Molec Biol VL - 57 UR - https://doi.org/10.1007/s11103-005-2860-4 DO - 10.1007/s11103-005-2860-4 ID - Mahalingam2005 ER - TY - JOUR AU - Briat, J. F. AU - Ravet, K. AU - Arnaud, N. AU - Duc, C. AU - Boucherez, J. AU - Touraine, B. AU - Cellier, F. AU - Gaymard, F. PY - 2010 DA - 2010// TI - New insights into ferritin synthesis and function highlight a link between iron homeostasis and oxidative stress in plants JO - Ann Botany VL - 105 UR - https://doi.org/10.1093/aob/mcp128 DO - 10.1093/aob/mcp128 ID - Briat2010 ER - TY - JOUR AU - Ravet, K. AU - Touraine, B. AU - Boucherez, J. AU - Briat, J. F. AU - Gaymard, F. AU - Cellier, F. PY - 2009 DA - 2009// TI - Ferritins control interaction between iron homeostasis and oxidative stress in Arabidopsis JO - Plant J VL - 57 UR - https://doi.org/10.1111/j.1365-313X.2008.03698.x DO - 10.1111/j.1365-313X.2008.03698.x ID - Ravet2009 ER - TY - JOUR AU - Potikha, T. S. AU - Collins, C. C. AU - Johnson, D. I. AU - Delmer, D. P. AU - Levine, A. PY - 1999 DA - 1999// TI - The involvement of hydrogen peroxide in the differentiation of secondary walls in cotton fibers JO - Plant Physiol VL - 119 UR - https://doi.org/10.1104/pp.119.3.849 DO - 10.1104/pp.119.3.849 ID - Potikha1999 ER - TY - JOUR AU - Haigler, C. H. AU - Ivanova-Datcheva, M. AU - Hogan, P. S. AU - Salnikov, V. V. AU - Hwang, S. AU - Martin, K. AU - Delmer, D. P. PY - 2001 DA - 2001// TI - Carbon partitioning to cellulose synthesis JO - Plant Molec Biol VL - 47 UR - https://doi.org/10.1023/A:1010615027986 DO - 10.1023/A:1010615027986 ID - Haigler2001 ER - TY - JOUR AU - Amor, Y. AU - Haigler, C. H. AU - Johnson, S. AU - Wainscott, M. AU - Delmer, D. P. PY - 1995 DA - 1995// TI - A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants JO - Proc Natl Acad Sci VL - 92 UR - https://doi.org/10.1073/pnas.92.20.9353 DO - 10.1073/pnas.92.20.9353 ID - Amor1995 ER - TY - JOUR AU - Salnikov, V. V. AU - Grimson, M. J. AU - Seagull, R. W. AU - Haigler, C. PY - 2003 DA - 2003// TI - Localization of sucrose synthase and callose in freeze-substituted secondary-wall-stage cotton fibers JO - Protoplasma VL - 221 ID - Salnikov2003 ER - TY - JOUR AU - Bieniawska, Z. AU - Barratt, D. H. P. AU - Garlick, A. P. AU - Thole, V. AU - Kruger, N. J. AU - Martin, C. AU - Zrenner, R. AU - Smith, A. M. PY - 2007 DA - 2007// TI - Analysis of the sucrose synthase gene family in Arabidopsis JO - Plant J VL - 49 UR - https://doi.org/10.1111/j.1365-313X.2006.03011.x DO - 10.1111/j.1365-313X.2006.03011.x ID - Bieniawska2007 ER - TY - JOUR AU - Rook, F. AU - Corke, F. AU - Baier, M. AU - Holman, R. AU - May, A. G. AU - Bevan, M. W. PY - 2006 DA - 2006// TI - Impaired sucrose induction 1 encodes a conserved plant-specific protein that couples carbohydrate availability to gene expression and plant growth JO - Plant J VL - 46 UR - https://doi.org/10.1111/j.1365-313X.2006.02765.x DO - 10.1111/j.1365-313X.2006.02765.x ID - Rook2006 ER - TY - JOUR AU - Moinuddin, S. G. A. AU - Jourdes, M. AU - Laskar, D. D. AU - Ki, C. AU - Cardenas, C. L. AU - Kim, K. W. AU - Zhang, D. AU - Davin, L. B. AU - Lewis, N. G. PY - 2010 DA - 2010// TI - Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMT (caffeic acid O-methyl transferase) mutant Atomt1 JO - Org Biomol Chem VL - 8 UR - https://doi.org/10.1039/c004817h DO - 10.1039/c004817h ID - Moinuddin2010 ER - TY - JOUR AU - Fan, L. AU - Shi, W. J. AU - Hu, W. R. AU - Hao, X. Y. AU - Wang, D. M. AU - Yuan, H. AU - Yan, H. Y. PY - 2009 DA - 2009// TI - Molecular and biochemical evidence for phenylpropanoid synthesis and presence of wall-linked phenolics in cotton fibers JO - J Integ Plant Biol VL - 51 UR - https://doi.org/10.1111/j.1744-7909.2009.00840.x DO - 10.1111/j.1744-7909.2009.00840.x ID - Fan2009 ER - TY - JOUR AU - Tuttle, J. AU - Idris, A. AU - Brown, J. AU - Haigler, C. AU - Robertson, D. PY - 2008 DA - 2008// TI - Geminivirus-mediated gene silencing from cotton leaf crumple virus is enhanced by low temperature in Gossypium hirsutum JO - Plant Physiol VL - 148 UR - https://doi.org/10.1104/pp.108.123869 DO - 10.1104/pp.108.123869 ID - Tuttle2008 ER - TY - JOUR AU - Taliercio, E. W. AU - Boykin, D. PY - 2007 DA - 2007// TI - Analysis of gene expression in cotton fiber initials JO - BMC Plant Biol VL - 7 UR - https://doi.org/10.1186/1471-2229-7-22 DO - 10.1186/1471-2229-7-22 ID - Taliercio2007 ER - TY - CHAP AU - Wilkins, T. A. AU - Smart, L. B. ED - Krieg, P. A. PY - 1996 DA - 1996// TI - Isolation of RNA from plant tissue BT - A Laboratory Guide to RNA: solation, Analysis and Synthesis PB - Wiley-Liss CY - New York ID - Wilkins1996 ER - TY - JOUR AU - Udall, J. A. AU - Swanson, J. M. AU - Haller, K. AU - Rapp, R. A. AU - Sparks, M. E. AU - Hatfield, J. AU - Yu, Y. S. AU - Wu, Y. R. AU - Dowd, C. AU - Arpat, A. B. PY - 2006 DA - 2006// TI - A global assembly of cotton ESTs JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4602906 DO - 10.1101/gr.4602906 ID - Udall2006 ER - TY - JOUR AU - Senchina, D. S. AU - Alvarez, I. AU - Cronn, R. C. AU - Liu, B. AU - Rong, J. K. AU - Noyes, R. D. AU - Paterson, A. H. AU - Wing, R. A. AU - Wilkins, T. A. AU - Wendel, J. F. PY - 2003 DA - 2003// TI - Rate variation among nuclear genes and the age of polyploidy in Gossypium JO - Molec Biol Evol VL - 20 UR - https://doi.org/10.1093/molbev/msg065 DO - 10.1093/molbev/msg065 ID - Senchina2003 ER - TY - JOUR AU - Flagel, L. AU - Udall, J. AU - Nettleton, D. AU - Wendel, J. PY - 2008 DA - 2008// TI - Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution JO - BMC Biol VL - 6 UR - https://doi.org/10.1186/1741-7007-6-16 DO - 10.1186/1741-7007-6-16 ID - Flagel2008 ER - TY - JOUR AU - Flagel, L. E. AU - Wendel, J. F. PY - 186 DA - 186// TI - Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation JO - New Phytologist VL - 1 ID - Flagel186 ER - TY - JOUR AU - Hovav, R. AU - Chaudhary, B. AU - Udall, J. A. AU - Flagel, L. AU - Wendel, J. F. PY - 2008 DA - 2008// TI - Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton JO - Genetics VL - 179 UR - https://doi.org/10.1534/genetics.108.089656 DO - 10.1534/genetics.108.089656 ID - Hovav2008 ER - TY - JOUR AU - Hovav, R. AU - Udall, J. A. AU - Chaudhary, B. AU - Rapp, R. AU - Flagel, L. AU - Wendel, J. F. PY - 2008 DA - 2008// TI - Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant JO - Proc Natl Acad Sci VL - 105 UR - https://doi.org/10.1073/pnas.0711569105 DO - 10.1073/pnas.0711569105 ID - Hovav2008 ER - TY - BOOK AU - Velleman, P. F. AU - Hoaglin, D. C. PY - 1981 DA - 1981// TI - The ABCs of Exploratory Data Analysis PB - Duxbury Press CY - California ID - Velleman1981 ER - TY - BOOK AU - Tukey, J. W. PY - 1977 DA - 1977// TI - Exploratory Data Analysis PB - Addison-Wesley CY - Massachussetts ID - Tukey1977 ER - TY - BOOK PY - 2007 DA - 2007// TI - R: A Language and Environment For Statistical Computing PB - R Foundation for Statistical Computing CY - Vienna ID - ref83 ER - TY - BOOK AU - Littell, R. C. AU - Milliken, G. A. AU - Stroup, W. W. AU - Wolfinger, R. D. PY - 1996 DA - 1996// TI - SAS System For Mixed Models PB - SAS Institute CY - North Carolina ID - Littell1996 ER - TY - CHAP AU - Storey, J. D. AU - Tibshirani, R. ED - Parmigiani, G. ED - Garrett, E. S. ED - Irizarry, R. A. ED - Zeger, S. L. PY - 2003 DA - 2003// TI - SAM thresholding and false discovery rates for detecting differential gene expression in DNA microarrays BT - The Analysis of Gene Expression Data: Methods and Software PB - Springer CY - New York UR - https://doi.org/10.1007/0-387-21679-0_12 DO - 10.1007/0-387-21679-0_12 ID - Storey2003 ER - TY - JOUR AU - Conesa, A. AU - Gotz, S. AU - Garcia-Gomez, J. M. AU - Terol, J. AU - Talon, M. AU - Robles, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER -