Table 2 The primers used in this study.
Haplogroup/AMG | Primer | SNP | Length |
|---|---|---|---|
HVRI-AB | L16017 5'-TTCTCTGTTCTTTCATGGGGA H16251 5'-GGAGTTGCAGTTGATGTGTGA | Sequencing | 235 bp |
HVRI-CD | L16201 5'-CAAGCAAGTACAGCAATCAAC H16409 5'-AGGATGGTGGTCAAGGGA | Sequencing | 209 bp |
M | 10400T 5'-taattaTACAAAAAGGATTAGACTGtgCT 10400C 5'-TACAAAAAGGATTAGACaGAACC 10400R 5'-GAAGTGAGATGGTAAATGCTAG | 10400T | 149 bp/142 bp |
R | L12604 5'-ATCCCTGTAGCATTGTTCG H12754 5'-GTTGGAATAGGTTGTTAGCG | 12705C | 151 bp |
UK | L12247 5'-TAACAACATGGCTTTCTCAACT H12377 5'-GAAGTCAGGGTTAGGGTGGT | 12308G | 132 bp |
C | L14318T 5'-CCTTCATAAATTATTCAGCTTCCaACACTAT L14318C 5'-aaaaagctaCATAAATTATTCAGCTTCCTACtCTAC H14318R 5'-TTAGTGGGGTTAGCGATGGA | 14318C | 110 bp/115 bp |
C4 | L11845 5'- AAGCCTCGCTAACCTCGCC H12120 5'- GGGTGAGTGAGCCCCATTG | 11969A | 176 bp |
B | L8215 5' ACAGTTTCATGCCCATCGTC ' H8297 5' ATGCTAAGTTAGCTTTACAG | CoII/tRNAlys 9-bp deletion | 121 bp/112 bp |
R1 | L4812 5'- GTCCCAGAGGTTACCCAAG H4975 5'- CCACCTCAACTGCCTGCTA | 4917G | 164 bp |
R11 | L9920 5'- CGCCTGATACTGGCATTTTGT H101075' -GTAGTAAGGCTAGGAGGGTGTTG | 10031C | 188 bp |
HV | L14668 5'- CATCATTATTCTCGCACGG H14831 5'- CGGAGATGTTGGATGGGGT | 14766T | 164 bp |
F | 3970T 5' taaaaTGTATTCGGCTATGAAGAtTAA 3970C 5' GTGTATTCGGCTATGAAGtATAG 3970R 5' AGTCTCAGGCTTCAACATCG | 3970T | 70 bp/66 bp |
H | L6966 5'-GGCATTGTATTAGCAAACTCAT H7118 5'-TAGGGTGTAGCCTGAGAATAG | 7028C | 152 bp |
AMG | AMG1 5'-CCTGGGCTCTGTAAAGAATAG AMG2 5'-CAGAGCTTAAACTGGGAAGCTG | Â | 115 bp/121 bp |
Paternal hg F | Forward 5' CCACAGAAGGATGCTGCTCA Reverse r 5' CACACTTTGGGTCCAGGATCAC | M89T | 125 bp |
Paternal hg K | Forward 5' GGACCCTGAAATACAGAAC Reverse 5' AAGCGCTACCTTACTTACAT | M9G | 128 bp |
Paternal hg P | Forward 5' GGGTGTGGACTTTACGAAC Reverse 5' AAATCCTACTATCTCCTGGC | M45A | 129 bp |
Paternal hg R1 | Forward 5' TTACTGTAACTTCCTAGAAAATTGG Reverse 5' ATCCTGAAAACAAAACACTGG | M173C | 126 bp |
Paternal hg R1a1a | Forward 5' CTCTTTAAGCCATTCCAGTCA Reverse 5' AAACATTACATGAGAAATTGCTG | M198A | 113 bp |