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Table 2 Kd and kpol for incorporation and misincorporation by mutant RNA polymerase (RNAP)

From: Stepwise mechanism for transcription fidelity

 

cGTP incorporation

ncGTP misincorporation

RNAP

kpol (s-1)

Kd (μM)

kpol (s-1)

Kd (μM)

WT/Stl

3.6 ± 0.2 × 10-3

24 ± 6

1.1 ± 0.4 × 10-4

710 ± 70

H1242A

9.8 × 10-1

20

1.7 ± 0.2 × 10-3

2300 ± 500

R1239A

2.1

20

2.7 ± 0.3 × 10-3

2700 ± 500

H1242A/R1239A

6.9 ± 0.5 × 10-2

37 ± 11

4.0 ± 0.4 × 10-4

2900 ± 500

M1238A

5.6 ± 0.5 × 10-2

47 ± 17

3.6 ± 0.3 × 10-4

990 ± 230

  1. Incorporation of cGTP was studied in ECG1, misincorporation of ncGTP - in ECA. Kd and kpol (reaction rate at saturating nucleotide triphosphate concentration) for incorporation by R1239A and H1242A RNAPs were obtained by fitting the kinetics data into a simple kinetic model as described in Additional File 1: Supplementary Methods. Kd and kpol for incorporation by other RNAPs and misincorporation by all RNAPs was obtained by fitting into the Michaelis-Menten equation as described in Materials and Methods. Errors are the standard error of data fitting. The values were rounded to two significant digits.