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Figure 5 | BMC Biology

Figure 5

From: Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

Figure 5

Top-scoring residue pair for the kinase domain. The kinase domain (orange) and the ligand (green) in the PDB structure 1ATP are shown. The second top-scoring residue pair between Leu205 (red) on the domain and position 1 of the binding motif on the ligand (blue), as well as the third top-scoring residue pair between Leu198 (purple) and position 1 of the ligand motif, are in close proximity. The MSA residue Tyr229 involved in the top-scoring pair is also shown (cyan).

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