TY - JOUR AU - Benson, D. AU - Karsch-Mizrachi, I. AU - Lipman, D. AU - Ostell, J. AU - Sayers, E. PY - 2009 DA - 2009// TI - GenBank JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn723 DO - 10.1093/nar/gkn723 ID - Benson2009 ER - TY - JOUR AU - McMahon, M. M. AU - Sanderson, M. J. PY - 2006 DA - 2006// TI - Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes JO - Syst Biol VL - 55 UR - https://doi.org/10.1080/10635150600999150 DO - 10.1080/10635150600999150 ID - McMahon2006 ER - TY - JOUR AU - Sanderson, M. J. AU - Boss, D. AU - Chen, D. AU - Cranston, K. A. AU - Wehe, A. PY - 2008 DA - 2008// TI - The PhyLoTA Browser: processing GenBank for molecular phylogenetics research JO - Syst Biol VL - 57 UR - https://doi.org/10.1080/10635150802158688 DO - 10.1080/10635150802158688 ID - Sanderson2008 ER - TY - JOUR AU - Thomson, R. C. AU - Shaffer, H. B. PY - 2010 DA - 2010// TI - Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa and the phylogeny of living turtles JO - Syst Biol VL - 59 UR - https://doi.org/10.1093/sysbio/syp075 DO - 10.1093/sysbio/syp075 ID - Thomson2010 ER - TY - CHAP AU - LaSalle, J. AU - Gould, I. D. ED - LaSalle, J. ED - Gauld, I. D. PY - 1993 DA - 1993// TI - Hymenoptera: their diversity and their impact on diversity of other organisms BT - Hymenoptera and Biodiversity PB - CAB International CY - Washington DC ID - LaSalle1993 ER - TY - CHAP AU - Quicke, D. L. J. PY - 1997 DA - 1997// BT - Parasitic Wasps PB - Kluwer Academic Publishers CY - New York ID - Quicke1997 ER - TY - JOUR AU - Whitfield, J. B. AU - Lockhart, P. J. PY - 2007 DA - 2007// TI - Deciphering ancient rapid radiations JO - Trends Ecol Evol VL - 22 UR - https://doi.org/10.1016/j.tree.2007.01.012 DO - 10.1016/j.tree.2007.01.012 ID - Whitfield2007 ER - TY - JOUR AU - Murphy, N. P. AU - Carey, D. AU - Castro, L. R. AU - Dowton, M. AU - Austin, A. D. PY - 2007 DA - 2007// TI - Phylogeny of the platygastroid wasps (Hymenoptera) based on sequences from the 18S rRNA, 28S rRNA and cytochrome oxidase I genes: implications for the evolution of the ovipositor system and host relationships JO - Biol J Linnean Soc VL - 91 UR - https://doi.org/10.1111/j.1095-8312.2007.00825.x DO - 10.1111/j.1095-8312.2007.00825.x ID - Murphy2007 ER - TY - JOUR AU - Königsmann, E. PY - 1976 DA - 1976// TI - Das phylogenetische System der Hymenoptera. Teil 1: Einführung, Grundplanmerkmale, Schwestergruppe und Fossilfunde JO - D Entomol Z (NF) VL - 23 UR - https://doi.org/10.1002/mmnd.19760230403 DO - 10.1002/mmnd.19760230403 ID - Königsmann1976 ER - TY - JOUR AU - Königsmann, E. PY - 1977 DA - 1977// TI - Das phylogenetische System der Hymenoptera. Teil 2: Symphyta JO - D Entomol Z (NF) VL - 24 UR - https://doi.org/10.1002/mmnd.19770240102 DO - 10.1002/mmnd.19770240102 ID - Königsmann1977 ER - TY - JOUR AU - Königsmann, E. PY - 1978 DA - 1978// TI - Das phylogenetische System der Hymenoptera. Teil 3: Terebrantes (Unterordnung Apocrita) JO - D Entomol Z (NF) VL - 25 UR - https://doi.org/10.1002/mmnd.19780250102 DO - 10.1002/mmnd.19780250102 ID - Königsmann1978 ER - TY - JOUR AU - Königsmann, E. PY - 1978 DA - 1978// TI - Das phylogenetische System der Hymenoptera. Teil 4: Aculeata (Unterordnung Apocrita) JO - D Entomol Z (NF) VL - 25 UR - https://doi.org/10.1002/mmnd.19780250408 DO - 10.1002/mmnd.19780250408 ID - Königsmann1978 ER - TY - JOUR AU - Rasnitsyn, A. P. PY - 1988 DA - 1988// TI - An outline of the evolution of the hymenopterous insects (order Vespida) JO - Orient Insects VL - 22 ID - Rasnitsyn1988 ER - TY - JOUR AU - Dowton, M. AU - Austin, A. D. PY - 1994 DA - 1994// TI - Molecular phylogeny of the insect order Hymenoptera: apocritan relationships JO - Proc Natl Acad Sci USA VL - 91 UR - https://doi.org/10.1073/pnas.91.21.9911 DO - 10.1073/pnas.91.21.9911 ID - Dowton1994 ER - TY - JOUR AU - Carpenter, J. M. AU - Wheeler, W. C. PY - 1999 DA - 1999// TI - Towards simultaneous analysis of morphological and molecular data in Hymenoptera JO - Zool Scripta VL - 28 UR - https://doi.org/10.1046/j.1463-6409.1999.00009.x DO - 10.1046/j.1463-6409.1999.00009.x ID - Carpenter1999 ER - TY - JOUR AU - Dowton, M. AU - Austin, A. D. PY - 2001 DA - 2001// TI - Simultaneous analysis of 16S, 28S, COI and morphology in the Hymenoptera: Apocrita evolutionary transitions among parasitic wasps JO - Biol J Linnean Soc VL - 74 ID - Dowton2001 ER - TY - JOUR AU - Vilhelmsen, L. AU - Mikó, I. AU - Krogmann, L. PY - 2010 DA - 2010// TI - Beyond the wasp-waist: structural diversity and phylogenetic significance of the mesosoma in apocritan wasps (Insecta: Hymenoptera) JO - Zool J Linnean Soc VL - 159 UR - https://doi.org/10.1111/j.1096-3642.2009.00576.x DO - 10.1111/j.1096-3642.2009.00576.x ID - Vilhelmsen2010 ER - TY - JOUR AU - Dowton, M. AU - Cameron, S. L. AU - Austin, A. D. AU - Whiting, M. F. PY - 2009 DA - 2009// TI - Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera: a lineage with both rapidly and slowly evolving mitochondrial sequences JO - Mol Phylogenet Evol VL - 52 UR - https://doi.org/10.1016/j.ympev.2009.04.001 DO - 10.1016/j.ympev.2009.04.001 ID - Dowton2009 ER - TY - JOUR AU - Davis, R. B. AU - Baldauf, S. L. AU - Mayhew, P. J. PY - 2010 DA - 2010// TI - The origins of species richness in the Hymenoptera: insights from a family-level supertree JO - BMC Evol Biol VL - 10 UR - https://doi.org/10.1186/1471-2148-10-109 DO - 10.1186/1471-2148-10-109 ID - Davis2010 ER - TY - JOUR AU - Sharanowski, B. J. AU - Robbertse, B. AU - Walker, J. AU - Voss, S. R. AU - Yoder, R. AU - Spatafora, J. AU - Sharkey, M. J. PY - 2010 DA - 2010// TI - Expressed sequence tags reveal Proctotrupomorpha (minus Chalcidoidea) as sister to Aculeata (Hymenoptera: Insecta) JO - Mol Phylogenet Evol VL - 57 UR - https://doi.org/10.1016/j.ympev.2010.07.006 DO - 10.1016/j.ympev.2010.07.006 ID - Sharanowski2010 ER - TY - JOUR AU - Heraty, J. AU - Ronquist, F. AU - Carpenter, J. M. AU - Hawks, D. AU - Schulmeister, S. AU - Dowling, A. P. AU - Murray, D. AU - Munro, J. AU - Wheeler, W. C. AU - Schiff, N. AU - Sharkey, M. PY - 2011 DA - 2011// TI - Evolution of the hymenopteran megaradiation JO - Mol Phylogenet Evol VL - 60 UR - https://doi.org/10.1016/j.ympev.2011.04.003 DO - 10.1016/j.ympev.2011.04.003 ID - Heraty2011 ER - TY - JOUR AU - Weinstock, G. M. AU - Robinson, G. E. AU - Gibbs, R. A. AU - Worley, K. C. AU - Evans, J. D. AU - Maleszka, R. AU - Robertson, H. M. AU - Weaver, D. B. AU - Beye, M. AU - Bork, P. AU - Elsik, C. G. AU - Hartfelder, K. AU - Hunt, G. J. AU - Zdobnov, E. M. AU - Amdam, G. V. AU - Bitondi, M. M. AU - Collins, A. M. AU - Cristino, A. S. AU - Lattorff, M. G. AU - Lobo, C. H. AU - Moritz, R. F. A. AU - Nunes, F. M. F. AU - Page, R. E. AU - Simoes, Z. L. P. AU - Wheeler, D. AU - Carninci, P. AU - Fukuda, S. AU - Hayashizaki, Y. AU - Kai, C. AU - Kawai, J. PY - 2006 DA - 2006// TI - Insights into social insects from the genome of the honeybee Apis mellifera JO - Nature VL - 443 UR - https://doi.org/10.1038/nature05260 DO - 10.1038/nature05260 ID - Weinstock2006 ER - TY - JOUR AU - Werren, J. H. AU - Richards, S. AU - Desjardins, C. A. AU - Niehuis, O. AU - Gadau, J. AU - Colbourne, J. K. AU - Beukeboom, L. W. AU - Desplan, C. AU - Elsik, C. G. AU - Grimmelikhuijzen, C. J. AU - Kitts, P. AU - Lynch, J. A. AU - Murphy, T. AU - Oliveira, D. C. AU - Smith, C. D. AU - van de Zande, L. AU - Worley, K. C. AU - Zdobnov, E. M. AU - Aerts, M. AU - Albert, S. AU - Anaya, V. H. AU - Anzola, J. M. AU - Barchuk, A. R. AU - Behura, S. K. AU - Bera, A. N. AU - Berenbaum, M. R. AU - Bertossa, R. C. AU - Bitondi, M. M. G. AU - Bordenstein, S. R. AU - Bork, P. PY - 2010 DA - 2010// TI - Functional and evolutionary insights from the genomes of three parasitoid Nasonia species JO - Science VL - 327 UR - https://doi.org/10.1126/science.1178028 DO - 10.1126/science.1178028 ID - Werren2010 ER - TY - JOUR AU - Ronquist, F. AU - Rasnitsyn, A. P. AU - Roy, A. AU - Eriksson, K. AU - Lindgren, M. PY - 1999 DA - 1999// TI - Phylogeny of the Hymenoptera: a cladistic reanalysis of Rasnitsyn's (1988) data JO - Zool Scripta VL - 28 UR - https://doi.org/10.1046/j.1463-6409.1999.00023.x DO - 10.1046/j.1463-6409.1999.00023.x ID - Ronquist1999 ER - TY - JOUR AU - Vilhelmsen, L. PY - 2001 DA - 2001// TI - Phylogeny and classification of the extant basal lineages of the Hymenoptera (Insecta) JO - Zool J Linnean Soc VL - 131 UR - https://doi.org/10.1111/j.1096-3642.2001.tb01320.x DO - 10.1111/j.1096-3642.2001.tb01320.x ID - Vilhelmsen2001 ER - TY - CHAP AU - Rasnitsyn, A. P. ED - Rasnitsyn, A. P. ED - Quicke, D. L. J. PY - 2002 DA - 2002// TI - Superorder Vespidea Laicharting, 1781. Order Hymenoptera Linn, 1758 BT - History of Insects PB - Kluwer Academic Publishers CY - Dordrecht UR - https://doi.org/10.1007/0-306-47577-4 DO - 10.1007/0-306-47577-4 ID - Rasnitsyn2002 ER - TY - JOUR AU - Schulmeister, S. PY - 2003 DA - 2003// TI - Simultaneous analysis of basal Hymenoptera (Insecta), introducing robust-choice sensitivity analysis JO - Biol J Linnean Soc VL - 79 UR - https://doi.org/10.1046/j.1095-8312.2003.00233.x DO - 10.1046/j.1095-8312.2003.00233.x ID - Schulmeister2003 ER - TY - JOUR AU - Brothers, D. J. PY - 1975 DA - 1975// TI - Phylogeny and classification of the aculeate Hymenoptera, with special reference to Mutillidae JO - Univ Kansas Sci Bull VL - 50 ID - Brothers1975 ER - TY - JOUR AU - Sharkey, M. J. PY - 2007 DA - 2007// TI - Phylogeny and classification of Hymenoptera JO - Zootaxa VL - 1668 ID - Sharkey2007 ER - TY - JOUR AU - Huang, X. AU - Madan, A. PY - 1999 DA - 1999// TI - CAP3: A DNA sequence assembly program JO - Genome Res VL - 9 UR - https://doi.org/10.1101/gr.9.9.868 DO - 10.1101/gr.9.9.868 ID - Huang1999 ER - TY - JOUR AU - Ebersberger, I. AU - Strauss, S. AU - von Haeseler, A. PY - 2009 DA - 2009// TI - HaMStR: Profile hidden Markov model based search for orthologs in ESTs JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-157 DO - 10.1186/1471-2148-9-157 ID - Ebersberger2009 ER - TY - JOUR AU - Tatusova, T. A. AU - Madden, T. L. PY - 1999 DA - 1999// TI - BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences JO - FEMS Microbiol Lett VL - 174 UR - https://doi.org/10.1111/j.1574-6968.1999.tb13575.x DO - 10.1111/j.1574-6968.1999.tb13575.x ID - Tatusova1999 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. AU - Miyata, T. PY - 2002 DA - 2002// TI - MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf436 DO - 10.1093/nar/gkf436 ID - Katoh2002 ER - TY - JOUR AU - Katoh, K. AU - Toh, H. PY - 2008 DA - 2008// TI - Recent developments in the MAFFT multiple sequence alignment program JO - Brief Bioinform VL - 9 UR - https://doi.org/10.1093/bib/bbn013 DO - 10.1093/bib/bbn013 ID - Katoh2008 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Misof, B. AU - Misof, K. PY - 2009 DA - 2009// TI - A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion JO - Syst Biol VL - 58 UR - https://doi.org/10.1093/sysbio/syp006 DO - 10.1093/sysbio/syp006 ID - Misof2009 ER - TY - JOUR AU - Kück, P. AU - Meusemann, K. AU - Dambach, J. AU - Thormann, B. AU - von Reumont, B. M. AU - Waegele, J. W. AU - Misof, B. PY - 2010 DA - 2010// TI - Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees JO - Front Zool VL - 7 UR - https://doi.org/10.1186/1742-9994-7-10 DO - 10.1186/1742-9994-7-10 ID - Kück2010 ER - TY - BOOK AU - Kück, P. PY - 2009 DA - 2009// TI - ALICUT: a PerlScript which cuts ALISCORE identified RSS PB - Department of Bioinformatics, Zoologisches Forschungsmuseum A. Koenig (ZFMK), version 2.0 edition CY - Bonn, Germany ID - Kück2009 ER - TY - JOUR AU - Castresana, J. PY - 2000 DA - 2000// TI - Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026334 DO - 10.1093/oxfordjournals.molbev.a026334 ID - Castresana2000 ER - TY - JOUR AU - Talavera, G. AU - Castresana, J. PY - 2007 DA - 2007// TI - Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments JO - Syst Biol VL - 56 UR - https://doi.org/10.1080/10635150701472164 DO - 10.1080/10635150701472164 ID - Talavera2007 ER - TY - JOUR AU - Schmidt, H. A. AU - Strimmer, K. AU - Vingron, M. AU - von Haeseler, A. PY - 2002 DA - 2002// TI - TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.3.502 DO - 10.1093/bioinformatics/18.3.502 ID - Schmidt2002 ER - TY - JOUR AU - Stamatakis, A. PY - 2006 DA - 2006// TI - RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl446 DO - 10.1093/bioinformatics/btl446 ID - Stamatakis2006 ER - TY - CHAP AU - Ott, M. AU - Zola, J. AU - Stamatakis, A. AU - Aluru, S. PY - 2007 DA - 2007// TI - Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L BT - Proceedings of the 2007 ACM/IEEE Conference on Supercomputing: 2007 Reno, NV, USA PB - VDE Verlag CY - Berlin UR - https://doi.org/10.1145/1362622.1362628 DO - 10.1145/1362622.1362628 ID - Ott2007 ER - TY - BOOK AU - Gilbert, D. PY - 2001 DA - 2001// TI - Readseq PB - Indiana University CY - Bloomington, Indiana ID - Gilbert2001 ER - TY - JOUR AU - Abascal, F. AU - Zardoya, R. AU - Posada, D. PY - 2005 DA - 2005// TI - ProtTest: Selection of best-fit models of protein evolution JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti263 DO - 10.1093/bioinformatics/bti263 ID - Abascal2005 ER - TY - JOUR AU - Stamatakis, A. AU - Hoover, P. AU - Rougemont, J. PY - 2008 DA - 2008// TI - A rapid bootstrap algorithm for the RAxML web servers JO - Syst Biol VL - 57 UR - https://doi.org/10.1080/10635150802429642 DO - 10.1080/10635150802429642 ID - Stamatakis2008 ER - TY - JOUR AU - Pattengale, N. D. AU - Alipour, M. AU - Bininda-Emonds, O. R. P. AU - Moret, B. M. E. AU - Stamatakis, A. PY - 2010 DA - 2010// TI - How many bootstrap replicates are necessary? JO - J Comput Biol VL - 17 UR - https://doi.org/10.1089/cmb.2009.0179 DO - 10.1089/cmb.2009.0179 ID - Pattengale2010 ER - TY - JOUR AU - Huson, D. H. AU - Richter, D. C. AU - Rausch, C. AU - Dezulian, T. AU - Franz, M. AU - Rupp, R. PY - 2007 DA - 2007// TI - Dendroscope: an interactive viewer for large phylogenetic trees JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-460 DO - 10.1186/1471-2105-8-460 ID - Huson2007 ER - TY - JOUR AU - Davis, R. B. AU - Baldauf, S. L. AU - Mayhew, P. J. PY - 2010 DA - 2010// TI - Many hexapod groups originated earlier and withstood extinction events better than previously realized: inferences from supertrees JO - Proc Royal Soc London B VL - 277 UR - https://doi.org/10.1098/rspb.2009.2299 DO - 10.1098/rspb.2009.2299 ID - Davis2010 ER - TY - JOUR AU - Smith, S. A. AU - Beaulieu, J. AU - Donoghue, M. J. PY - 2009 DA - 2009// TI - Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-37 DO - 10.1186/1471-2148-9-37 ID - Smith2009 ER - TY - JOUR AU - Hunt, T. AU - Vogler, A. P. PY - 2008 DA - 2008// TI - A protocol for large-scale rRNA sequence analysis: towards a detailed phylogeny of Coleoptera JO - Mol Phylogenet Evol VL - 47 UR - https://doi.org/10.1016/j.ympev.2007.11.029 DO - 10.1016/j.ympev.2007.11.029 ID - Hunt2008 ER - TY - STD TI - Pyron RA, Wiens JJ: A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol Phylogenet Evol. ID - ref52 ER - TY - JOUR AU - Driskell, A. C. AU - Ané, C. AU - Burleigh, J. G. AU - McMahon, M. M. AU - O'Meara, B. AU - Sanderson, M. J. PY - 2004 DA - 2004// TI - Prospects for building the tree of life from large sequence databases JO - Science VL - 306 UR - https://doi.org/10.1126/science.1102036 DO - 10.1126/science.1102036 ID - Driskell2004 ER - TY - JOUR AU - Wiens, J. J. PY - 2003 DA - 2003// TI - Missing data, incomplete taxa, and phylogenetic accuracy JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390218330 DO - 10.1080/10635150390218330 ID - Wiens2003 ER - TY - JOUR AU - Sharkey, M. J. AU - Roy, A. PY - 2002 DA - 2002// TI - Phylogeny of the Hymenoptera: a reanalysis of the Ronquist et al. (1999) reanalysis, with an emphasis on wing venation and apocritan relationships JO - Zool Scripta VL - 31 UR - https://doi.org/10.1046/j.0300-3256.2001.00081.x DO - 10.1046/j.0300-3256.2001.00081.x ID - Sharkey2002 ER - TY - JOUR AU - Castro, L. R. AU - Dowton, M. PY - 2006 DA - 2006// TI - Molecular analyses of the Apocrita (Insecta: Hymenoptera) suggest that the Chalcidoidea are sister to the diaprioid complex JO - Invert Syst VL - 20 UR - https://doi.org/10.1071/IS06002 DO - 10.1071/IS06002 ID - Castro2006 ER - TY - JOUR AU - Sharkey, M. J. AU - Carpenter, J. M. AU - Vilhelmsen, L. AU - Heraty, J. AU - Liljeblad, J. AU - Dowling, A. P. G. AU - Schulmeister, S. AU - Murray, D. AU - Deans, A. R. AU - Ronquist, F. AU - Krogmann, L. AU - Wheeler, W. C. PY - 2011 DA - 2011// TI - Phylogenetic relationships among superfamilies of Hymenoptera JO - Cladistics VL - 27 UR - https://doi.org/10.1111/j.1096-0031.2010.00316.x DO - 10.1111/j.1096-0031.2010.00316.x ID - Sharkey2011 ER - TY - JOUR AU - Gibson, G. A. P. PY - 1986 DA - 1986// TI - Evidence for monophyly and relationships of Chalcidoidea, Mymaridae, and Mymarommatidae (Hymenoptera: Terebrantes) JO - Can Entomol VL - 118 UR - https://doi.org/10.4039/Ent118205-3 DO - 10.4039/Ent118205-3 ID - Gibson1986 ER - TY - JOUR AU - Sanderson, M. PY - 2008 DA - 2008// TI - Phylogenetic signal in the eukaryotic tree of life JO - Science VL - 321 UR - https://doi.org/10.1126/science.1154449 DO - 10.1126/science.1154449 ID - Sanderson2008 ER -