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Table 1 Correlation coefficients for composition differences in transcription factor clusters mapping to annotated genes and promoters

From: Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements

Composition correlation

K562

Gm12878

prom-h - gene-any-h

0.46

0.04

prom-z - gene-any-z

0.75

0.32

prom-h - prom-z

0.70

0.37

gene-any-h - gene-any-z

0.99

0.99

gene-any-h - prom-z

0.75

0.32

gene-pos-h - gene-neg-h

0.40

0.56

gene-pos-z - gene-neg-z

0.66

0.81

gene-pos-h - prom-h

0.52

0.04

gene-pos-z - prom-z

0.89

0.39

gene-pos-h - gene-pos-z

0.93

0.97

gene-neg-h - gene-neg-z

0.99

0.88

  1. prom, promoter clusters; gene-any, gene clusters; gene-pos, gene clusters overlapping with H3K4me; gene-neg, gene clusters not overlapping with H3K4me; h, genes with high expression; z, genes with zero expression.
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BMC Biology

ISSN: 1741-7007

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