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Table 2 Supergenome size estimates

From: Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes

ATGC

Genera

F

P

K

M

S, uniform

S, power

a

b

a

b

ATGC001

Enterobacteria

4215

24845

38293

13448

37267 ± 458

8.8

45092

10.7

ATGC002

Enterobacter-Klebsiella

5234

10802

13454

2652

17560 ± 429

3.4

18403

3.5

ATGC003

Streptococcus

2020

4478

5330

852

6754 ± 297

3.3

6754

3.3

ATGC004

Streptococcus

1808

3746

4132

386

6664 ± 554

3.7

6664

3.7

ATGC005

Streptococcus

1948

3466

3692

226

7669 ± 877

3.9

7669

3.9

ATGC014

Bacillus

5533

16678

19554

2876

43302 ± 1676

7.8

43303

7.8

ATGC015

Bacillus

3976

9242

9871

629

55655 ± 7699

14.0

78848

19.8

ATGC021

Chlamydia

901

1168

1395

227

1260 ± 31

1.4

1344

1.5

ATGC022

Chlamydia-Chlamydophila

1011

1441

1699

258

1758 ± 83

1.7

1759

1.7

ATGC025

Mycobacterium

3836

7293

9481

2188

9484 ± 190

2.5

13514

3.5

ATGC033

Mycoplasma

742

883

899

16

1784 ± 539

2.4

1785

2.4

ATGC046

Rickettsia

1107

4454

5050

596

14677 ± 1293

13.3

24011

21.7

ATGC052

Helicobacter

1501

4568

6270

1702

6377 ± 179

4.2

7246

4.8

ATGC054

Staphylococcus

2452

4815

5413

598

8071 ± 464

3.3

8322

3.4

ATGC056

Lactobacillus

2896

4893

4896

3

Open

 

Open

 

ATGC067

Corynebacterium

2074

2721

2721

0

Open

 

Open

 

ATGC068

Corynebacterium

2227

3453

3460

7

Open

 

Open

 

ATGC072

Pseudomonas

5297

11389

12037

648

125699 ± 20767

23.7

125700

23.7

ATGC082

Clostridium

3655

5993

5993

0

Open

 

Open

 

ATGC089

Burkholderia

5707

13381

13546

165

Open

 

Open

 

ATGC090

Burkholderia

6428

14540

14659

119

Open

 

Open

 

ATGC094

Sulfolobus

2638

4471

4479

8

Open

 

Open

 

ATGC105

Bifidobacterium

1952

4352

4986

634

11174 ± 829

5.7

11174

5.7

ATGC106

Bifidobacterium

1568

2018

2087

69

4631 ± 1020

3.0

5619

3.6

ATGC109

Listeria

2843

5834

7588

1754

8207 ± 210

2.9

11712

4.1

ATGC121

Shewanella

4166

8090

9427

1337

15597 ± 633

3.7

15929

3.8

ATGC128

Yersinia

3934

8287

9406

1119

16479 ± 778

4.2

20747

5.3

ATGC135

Xanthomonas

4204

9814

9876

62

Open

 

Open

 

ATGC137

Brucella-Ochrobactrum

3212

6012

7213

1201

9376 ± 343

2.9

11086

3.5

ATGC138

Neisseria

1937

4344

4840

496

8395 ± 670

4.3

8395

4.3

ATGC139

Francisella

1613

3247

3426

179

8801 ± 1360

5.5

8801

5.5

ATGC144

Campylobacter

1650

2637

3101

464

3811 ± 179

2.3

3811

2.3

ATGC153

Acinetobacter

3517

6455

6497

42

Open

 

Open

 

ATGC163

Propionibacterium

2270

3485

3488

3

Open

 

Open

 

ATGC186

Legionella

3038

4587

4587

0

Open

 

Open

 
  1. a, number of gene families in the estimated supergenome; b, supergenome size in genome units (ratio of the estimated number of families in the supergenome to the median number of families in a genome given by F); F, median number of gene families per genome; K, total number of gene family gains; M, number of multiple gene family gains; P, pangenome size (sum total of the gene families); S, supergenome size (estimated under the uniform and power law models; see text for details).