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Table 2 Supergenome size estimates

From: Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes

ATGC Genera F P K M S, uniform S, power
a b a b
ATGC001 Enterobacteria 4215 24845 38293 13448 37267 ± 458 8.8 45092 10.7
ATGC002 Enterobacter-Klebsiella 5234 10802 13454 2652 17560 ± 429 3.4 18403 3.5
ATGC003 Streptococcus 2020 4478 5330 852 6754 ± 297 3.3 6754 3.3
ATGC004 Streptococcus 1808 3746 4132 386 6664 ± 554 3.7 6664 3.7
ATGC005 Streptococcus 1948 3466 3692 226 7669 ± 877 3.9 7669 3.9
ATGC014 Bacillus 5533 16678 19554 2876 43302 ± 1676 7.8 43303 7.8
ATGC015 Bacillus 3976 9242 9871 629 55655 ± 7699 14.0 78848 19.8
ATGC021 Chlamydia 901 1168 1395 227 1260 ± 31 1.4 1344 1.5
ATGC022 Chlamydia-Chlamydophila 1011 1441 1699 258 1758 ± 83 1.7 1759 1.7
ATGC025 Mycobacterium 3836 7293 9481 2188 9484 ± 190 2.5 13514 3.5
ATGC033 Mycoplasma 742 883 899 16 1784 ± 539 2.4 1785 2.4
ATGC046 Rickettsia 1107 4454 5050 596 14677 ± 1293 13.3 24011 21.7
ATGC052 Helicobacter 1501 4568 6270 1702 6377 ± 179 4.2 7246 4.8
ATGC054 Staphylococcus 2452 4815 5413 598 8071 ± 464 3.3 8322 3.4
ATGC056 Lactobacillus 2896 4893 4896 3 Open   Open  
ATGC067 Corynebacterium 2074 2721 2721 0 Open   Open  
ATGC068 Corynebacterium 2227 3453 3460 7 Open   Open  
ATGC072 Pseudomonas 5297 11389 12037 648 125699 ± 20767 23.7 125700 23.7
ATGC082 Clostridium 3655 5993 5993 0 Open   Open  
ATGC089 Burkholderia 5707 13381 13546 165 Open   Open  
ATGC090 Burkholderia 6428 14540 14659 119 Open   Open  
ATGC094 Sulfolobus 2638 4471 4479 8 Open   Open  
ATGC105 Bifidobacterium 1952 4352 4986 634 11174 ± 829 5.7 11174 5.7
ATGC106 Bifidobacterium 1568 2018 2087 69 4631 ± 1020 3.0 5619 3.6
ATGC109 Listeria 2843 5834 7588 1754 8207 ± 210 2.9 11712 4.1
ATGC121 Shewanella 4166 8090 9427 1337 15597 ± 633 3.7 15929 3.8
ATGC128 Yersinia 3934 8287 9406 1119 16479 ± 778 4.2 20747 5.3
ATGC135 Xanthomonas 4204 9814 9876 62 Open   Open  
ATGC137 Brucella-Ochrobactrum 3212 6012 7213 1201 9376 ± 343 2.9 11086 3.5
ATGC138 Neisseria 1937 4344 4840 496 8395 ± 670 4.3 8395 4.3
ATGC139 Francisella 1613 3247 3426 179 8801 ± 1360 5.5 8801 5.5
ATGC144 Campylobacter 1650 2637 3101 464 3811 ± 179 2.3 3811 2.3
ATGC153 Acinetobacter 3517 6455 6497 42 Open   Open  
ATGC163 Propionibacterium 2270 3485 3488 3 Open   Open  
ATGC186 Legionella 3038 4587 4587 0 Open   Open  
  1. a, number of gene families in the estimated supergenome; b, supergenome size in genome units (ratio of the estimated number of families in the supergenome to the median number of families in a genome given by F); F, median number of gene families per genome; K, total number of gene family gains; M, number of multiple gene family gains; P, pangenome size (sum total of the gene families); S, supergenome size (estimated under the uniform and power law models; see text for details).