Network term | Term description | Biological meaning in this work |
---|---|---|
Node | Single unit of a graph | A V4 sequence |
Edge | Connection between two nodes | Sequence similarity between two V4 sequences |
Assortativity | Measure of the preferential connection between a set of nodes of interest | Evaluation of similarity of a set of sequences from the same habitat or location (for example, if sequences from one habitat are more similar to one another than they are similar to sequences from other habitats, their assortativity will be high. Environments with distinctive similar V4 will have such a high assortativity). See Figure 2C. |
Closeness | Measure of the centrality/peripherality of a node in a network | Measure of sequence divergence relative to the rest of the dataset (for example, divergent sequences (with respect to the rest of the dataset) have a low closeness and tend to be more peripheral as they share less similarity to other sequences). See Figure 2D. |
Shortest path | Shortest distance between a pair of nodes | Measure to quantify the divergence between a pair of sequences (for example, a long shortest path between an environmental sequence and a sequence from a cultured ciliate indicates a high divergence between these sequences, since these sequences are not direct neighbors in the graph). See Figure 2D. |