Fig. 3

ChIP-Seq profile of the mouse Rad9a gene corresponding to the promoter region. (a) The ChIP-Seq profile for NM1 aligned against the mouse genome from (a) MEFs and (b) from the mouse heart correlate with the ChIP-Seq profiles for Pol II, H3K4ac, H3K27ac, H3K9ac, the HAT P300, H3K4me3 but does not correlate with H3K4me1. In the comparative analysis both MEFs and tissue (heart) were used to be able to include the H3K9ac ChIP-seq data. The tissue data used for this comparison were obtained from the UCSC browser. Importantly, in all cases the data sets were aligned against the same mouse genome (mm9) and they are therefore comparable ChIP-Seq chromatin immunoprecipitation and deep sequencing, MEFs mouse embryonic fibroblasts, NM1 nuclear myosin 1c, UCSC University of California Santa Cruz