TY - JOUR AU - Elowitz, M. B. AU - Levine, A. J. AU - Siggia, E. D. AU - Swain, P. S. PY - 2002 DA - 2002// TI - Stochastic gene expression in a single cell JO - Science VL - 297 UR - https://doi.org/10.1126/science.1070919 DO - 10.1126/science.1070919 ID - Elowitz2002 ER - TY - JOUR AU - Choi, P. J. AU - Cai, L. AU - Frieda, K. AU - Xie, X. S. PY - 2008 DA - 2008// TI - A stochastic single-molecule event triggers phenotype switching of a bacterial cell JO - Science VL - 322 UR - https://doi.org/10.1126/science.1161427 DO - 10.1126/science.1161427 ID - Choi2008 ER - TY - JOUR AU - Dunlop, M. J. AU - Cox, R. S. AU - Levine, J. H. AU - Murray, R. M. AU - Elowitz, M. B. PY - 2008 DA - 2008// TI - Regulatory activity revealed by dynamic correlations in gene expression noise JO - Nat Genet VL - 40 UR - https://doi.org/10.1038/ng.281 DO - 10.1038/ng.281 ID - Dunlop2008 ER - TY - JOUR AU - Kaern, M. AU - Elston, T. C. AU - Blake, W. J. AU - Collins, J. J. PY - 2005 DA - 2005// TI - Stochasticity in gene expression: from theories to phenotypes JO - Nat Rev Genet VL - 6 UR - https://doi.org/10.1038/nrg1615 DO - 10.1038/nrg1615 ID - Kaern2005 ER - TY - JOUR AU - Taniguchi, Y. AU - Choi, P. J. AU - Li, G. -. W. AU - Chen, H. AU - Babu, M. AU - Hearn, J. PY - 2010 DA - 2010// TI - Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells JO - Science VL - 329 UR - https://doi.org/10.1126/science.1188308 DO - 10.1126/science.1188308 ID - Taniguchi2010 ER - TY - JOUR AU - Raj, A. AU - Oudenaarden, A. PY - 2009 DA - 2009// TI - Single-molecule approaches to stochastic gene expression JO - Annu Rev Biophys VL - 38 UR - https://doi.org/10.1146/annurev.biophys.37.032807.125928 DO - 10.1146/annurev.biophys.37.032807.125928 ID - Raj2009 ER - TY - JOUR AU - Cai, L. AU - Friedman, N. AU - Xie, X. S. PY - 2006 DA - 2006// TI - Stochastic protein expression in individual cells at the single molecule level JO - Nature VL - 440 UR - https://doi.org/10.1038/nature04599 DO - 10.1038/nature04599 ID - Cai2006 ER - TY - JOUR AU - Pedraza, J. M. AU - Oudenaarden, A. PY - 2005 DA - 2005// TI - Noise propagation in gene networks JO - Science VL - 307 UR - https://doi.org/10.1126/science.1109090 DO - 10.1126/science.1109090 ID - Pedraza2005 ER - TY - JOUR AU - Süel, G. M. AU - Garcia-Ojalvo, J. AU - Liberman, L. M. AU - Elowitz, M. B. PY - 2006 DA - 2006// TI - An excitable gene regulatory circuit induces transient cellular differentiation JO - Nature VL - 440 UR - https://doi.org/10.1038/nature04588 DO - 10.1038/nature04588 ID - Süel2006 ER - TY - JOUR AU - Balázsi, G. AU - Oudenaarden, A. AU - Collins, J. J. PY - 2011 DA - 2011// TI - Cellular decision making and biological noise: from microbes to mammals JO - Cell VL - 144 UR - https://doi.org/10.1016/j.cell.2011.01.030 DO - 10.1016/j.cell.2011.01.030 ID - Balázsi2011 ER - TY - JOUR AU - Kussell, E. AU - Leibler, S. PY - 2005 DA - 2005// TI - Phenotypic diversity, population growth, and information in fluctuating environments JO - Science VL - 309 UR - https://doi.org/10.1126/science.1114383 DO - 10.1126/science.1114383 ID - Kussell2005 ER - TY - JOUR AU - Balaban, N. Q. AU - Merrin, J. AU - Chait, R. AU - Kowalik, L. AU - Leibler, S. PY - 2004 DA - 2004// TI - Bacterial persistence as a phenotypic switch JO - Science VL - 305 UR - https://doi.org/10.1126/science.1099390 DO - 10.1126/science.1099390 ID - Balaban2004 ER - TY - JOUR AU - Wakamoto, Y. AU - Dhar, N. AU - Chait, R. AU - Schneider, K. AU - Signorino-Gelo, F. AU - Leibler, S. PY - 2013 DA - 2013// TI - Dynamic persistence of antibiotic-stressed mycobacteria JO - Science VL - 339 UR - https://doi.org/10.1126/science.1229858 DO - 10.1126/science.1229858 ID - Wakamoto2013 ER - TY - JOUR AU - Ta, S. AU - Tănase-Nicola, S. AU - Wolde, P. R. PY - 2008 DA - 2008// TI - Regulatory control and the costs and benefits of biochemical noise JO - PLoS Comput Biol VL - 4 UR - https://doi.org/10.1371/journal.pcbi.1000125 DO - 10.1371/journal.pcbi.1000125 ID - Ta2008 ER - TY - JOUR AU - Kalisky, T. AU - Dekel, E. AU - Alon, U. PY - 2007 DA - 2007// TI - Cost-benefit theory and optimal design of gene regulation functions JO - Phys Biol VL - 4 UR - https://doi.org/10.1088/1478-3975/4/4/001 DO - 10.1088/1478-3975/4/4/001 ID - Kalisky2007 ER - TY - JOUR AU - Mora, T. AU - Walczak, A. M. PY - 2013 DA - 2013// TI - Effect of phenotypic selection on stochastic gene expression JO - J Phys Chem B VL - 117 UR - https://doi.org/10.1021/jp403231f DO - 10.1021/jp403231f ID - Mora2013 ER - TY - JOUR AU - Rosenfeld, N. AU - Young, J. W. AU - Alon, U. AU - Swain, P. S. AU - Elowitz, M. B. PY - 2005 DA - 2005// TI - Gene regulation at the single-cell level JO - Science VL - 307 UR - https://doi.org/10.1126/science.1106914 DO - 10.1126/science.1106914 ID - Rosenfeld2005 ER - TY - JOUR AU - Yang, S. AU - Kim, S. AU - Rim Lim, Y. AU - Kim, C. AU - An, H. J. AU - Kim, J. -. H. PY - 2014 DA - 2014// TI - Contribution of RNA polymerase concentration variation to protein expression noise JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms5761 DO - 10.1038/ncomms5761 ID - Yang2014 ER - TY - JOUR AU - Swain, P. S. AU - Elowitz, M. B. AU - Siggia, E. D. PY - 2002 DA - 2002// TI - Intrinsic and extrinsic contributions to stochasticity in gene expression JO - Proc Natl Acad Sci U S A VL - 99 UR - https://doi.org/10.1073/pnas.162041399 DO - 10.1073/pnas.162041399 ID - Swain2002 ER - TY - JOUR AU - Zopf, C. J. AU - Quinn, K. AU - Zeidman, J. AU - Maheshri, N. PY - 2013 DA - 2013// TI - Cell-cycle dependence of transcription dominates noise in gene expression JO - PLoS Comput Biol VL - 9 UR - https://doi.org/10.1371/journal.pcbi.1003161 DO - 10.1371/journal.pcbi.1003161 ID - Zopf2013 ER - TY - JOUR AU - Cookson, N. A. AU - Cookson, S. W. AU - Tsimring, L. S. AU - Hasty, J. PY - 2010 DA - 2010// TI - Cell cycle-dependent variations in protein concentration JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp1069 DO - 10.1093/nar/gkp1069 ID - Cookson2010 ER - TY - JOUR AU - Wang, J. D. AU - Levin, P. A. PY - 2009 DA - 2009// TI - Metabolism, cell growth and the bacterial cell cycle JO - Nat Rev Microbiol VL - 7 UR - https://doi.org/10.1038/nrmicro2202 DO - 10.1038/nrmicro2202 ID - Wang2009 ER - TY - BOOK AU - Adiciptaningrum, A. M. PY - 2009 DA - 2009// TI - Phase variation of type 1 fimbriae: a single cell investigation PB - University of Amsterdam CY - Amsterdam ID - Adiciptaningrum2009 ER - TY - JOUR AU - Yu, J. AU - Xiao, J. AU - Ren, X. AU - Lao, K. AU - Xie, X. S. PY - 2006 DA - 2006// TI - Probing gene expression in live cells, one protein molecule at a time JO - Science VL - 311 UR - https://doi.org/10.1126/science.1119623 DO - 10.1126/science.1119623 ID - Yu2006 ER - TY - JOUR AU - Marathe, R. AU - Bierbaum, V. AU - Gomez, D. AU - Klumpp, S. PY - 2012 DA - 2012// TI - Deterministic and stochastic descriptions of gene expression dynamics JO - J Stat Phys VL - 148 UR - https://doi.org/10.1007/s10955-012-0459-0 DO - 10.1007/s10955-012-0459-0 ID - Marathe2012 ER - TY - JOUR AU - Acar, M. AU - Pando, B. F. AU - Arnold, F. H. AU - Elowitz, M. B. AU - Oudenaarden, A. PY - 2010 DA - 2010// TI - A general mechanism for network-dosage compensation in gene circuits JO - Science VL - 329 UR - https://doi.org/10.1126/science.1190544 DO - 10.1126/science.1190544 ID - Acar2010 ER - TY - JOUR AU - Becskei, A. AU - Serrano, L. PY - 2000 DA - 2000// TI - Engineering stability in gene networks by autoregulation JO - Nature VL - 405 UR - https://doi.org/10.1038/35014651 DO - 10.1038/35014651 ID - Becskei2000 ER - TY - JOUR AU - Kiviet, D. J. AU - Nghe, P. AU - Walker, N. AU - Boulineau, S. AU - Sunderlikova, V. AU - Tans, S. J. PY - 2014 DA - 2014// TI - Stochasticity of metabolism and growth at the single-cell level JO - Nature VL - 514 UR - https://doi.org/10.1038/nature13582 DO - 10.1038/nature13582 ID - Kiviet2014 ER - TY - JOUR AU - Koppes, L. H. AU - Woldringh, C. L. PY - 1978 DA - 1978// TI - Size variations and correlation of different cell cycle events in slow-growing Escherichia coli JO - J Bacteriol VL - 134 ID - Koppes1978 ER - TY - JOUR AU - Cooper, S. AU - Helmstetter, C. E. PY - 1968 DA - 1968// TI - Chromosome replication and the division cycle of Escherichia coli B/r JO - J Mol Biol VL - 31 UR - https://doi.org/10.1016/0022-2836(68)90425-7 DO - 10.1016/0022-2836(68)90425-7 ID - Cooper1968 ER - TY - JOUR AU - Cooper, S. PY - 1988 DA - 1988// TI - What is the bacterial growth law during the division cycle? JO - J Bacteriol VL - 170 ID - Cooper1988 ER - TY - JOUR AU - Cooper, S. PY - 2006 DA - 2006// TI - Distinguishing between linear and exponential cell growth during the division cycle: single-cell studies, cell-culture studies, and the object of cell-cycle research JO - Theor Biol Med Model VL - 3 UR - https://doi.org/10.1186/1742-4682-3-10 DO - 10.1186/1742-4682-3-10 ID - Cooper2006 ER - TY - JOUR AU - Mir, M. AU - Wang, Z. AU - Shen, Z. AU - Bednarz, M. AU - Bashir, R. AU - Golding, I. PY - 2011 DA - 2011// TI - Optical measurement of cycle-dependent cell growth JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1100506108 DO - 10.1073/pnas.1100506108 ID - Mir2011 ER - TY - JOUR AU - Reshes, G. AU - Vanounou, S. AU - Fishov, I. AU - Feingold, M. PY - 2008 DA - 2008// TI - Cell shape dynamics in Escherichia coli JO - Biophys J VL - 94 UR - https://doi.org/10.1529/biophysj.107.104398 DO - 10.1529/biophysj.107.104398 ID - Reshes2008 ER - TY - JOUR AU - Kubitschek, H. E. PY - 1981 DA - 1981// TI - Bilinear cell growth of Escherichia coli JO - J Bacteriol VL - 148 ID - Kubitschek1981 ER - TY - JOUR AU - Kubitschek, H. E. PY - 1986 DA - 1986// TI - Increase in cell mass during the division cycle of Escherichia coli B/rA JO - J Bacteriol VL - 168 ID - Kubitschek1986 ER - TY - JOUR AU - Kubitschek, H. E. AU - Pai, S. R. PY - 1988 DA - 1988// TI - Variation in precursor pool size during the division cycle of Escherichia coli: further evidence for linear cell growth JO - J Bacteriol VL - 170 ID - Kubitschek1988 ER - TY - JOUR AU - Skarstad, K. AU - Boye, E. AU - Steen, H. B. PY - 1986 DA - 1986// TI - Timing of initiation of chromosome replication in individual Escherichia coli cells JO - EMBO J VL - 5 ID - Skarstad1986 ER - TY - JOUR AU - Bowsher, C. G. AU - Swain, P. S. PY - 2012 DA - 2012// TI - Identifying sources of variation and the flow of information in biochemical networks JO - Proc Natl Acad Sci U S A VL - 109 UR - https://doi.org/10.1073/pnas.1119407109 DO - 10.1073/pnas.1119407109 ID - Bowsher2012 ER - TY - JOUR AU - Hilfinger, A. AU - Paulsson, J. PY - 2011 DA - 2011// TI - Separating intrinsic from extrinsic fluctuations in dynamic biological systems JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1018832108 DO - 10.1073/pnas.1018832108 ID - Hilfinger2011 ER - TY - BOOK AU - White, D. AU - Drummond, J. AU - Fuqua, C. PY - 2012 DA - 2012// TI - The physiology and biochemistry of prokaryotes PB - Oxford University Press CY - New York ID - White2012 ER - TY - JOUR AU - Lu, H. P. AU - Xun, L. AU - Xie, X. S. PY - 1998 DA - 1998// TI - Single-molecule enzymatic dynamics JO - Science VL - 282 UR - https://doi.org/10.1126/science.282.5395.1877 DO - 10.1126/science.282.5395.1877 ID - Lu1998 ER - TY - JOUR AU - Heerden, J. H. AU - Wortel, M. T. AU - Bruggeman, F. J. AU - Heijnen, J. J. AU - Bollen, Y. J. M. AU - Planqué, R. PY - 2014 DA - 2014// TI - Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells JO - Science VL - 343 UR - https://doi.org/10.1126/science.1245114 DO - 10.1126/science.1245114 ID - Heerden2014 ER - TY - JOUR AU - Kempe, H. AU - Schwabe, A. AU - Cremazy, F. AU - Verschure, P. J. AU - Bruggeman, F. J. PY - 2014 DA - 2014// TI - The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise JO - Mol Biol Cell VL - 26 UR - https://doi.org/10.1091/mbc.E14-08-1296 DO - 10.1091/mbc.E14-08-1296 ID - Kempe2014 ER - TY - JOUR AU - Padovan-Merhar, O. AU - Nair, G. P. AU - Biaesch, A. G. AU - Mayer, A. AU - Scarfone, S. AU - Foley, S. W. PY - 2015 DA - 2015// TI - Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms JO - Mol Cell VL - 58 UR - https://doi.org/10.1016/j.molcel.2015.03.005 DO - 10.1016/j.molcel.2015.03.005 ID - Padovan-Merhar2015 ER - TY - JOUR AU - Nghe, P. AU - Boulineau, S. AU - Gude, S. AU - Recouvreux, P. AU - Zon, J. S. AU - Tans, S. J. PY - 2013 DA - 2013// TI - Microfabricated polyacrylamide devices for the controlled culture of growing cells and developing organisms JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0075537 DO - 10.1371/journal.pone.0075537 ID - Nghe2013 ER - TY - JOUR AU - Young, J. W. AU - Locke, J. C. W. AU - Altinok, A. AU - Rosenfeld, N. AU - Bacarian, T. AU - Swain, P. S. PY - 2012 DA - 2012// TI - Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy JO - Nat Protoc VL - 7 UR - https://doi.org/10.1038/nprot.2011.432 DO - 10.1038/nprot.2011.432 ID - Young2012 ER - TY - JOUR AU - Taheri-Araghi, S. AU - Bradde, S. AU - Sauls, J. T. AU - Hill, N. S. AU - Levin, P. A. AU - Paulsson, J. PY - 2014 DA - 2014// TI - Cell-size control and homeostasis in bacteria JO - Curr Biol VL - 25 UR - https://doi.org/10.1016/j.sbi.2013.10.005 DO - 10.1016/j.sbi.2013.10.005 ID - Taheri-Araghi2014 ER - TY - JOUR AU - Trueba, F. J. AU - Woldringh, C. L. PY - 1980 DA - 1980// TI - Changes in cell diameter during the division cycle of Escherichia coli JO - J Bacteriol VL - 142 ID - Trueba1980 ER -