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Table 2 Pairwise root mean square deviation (RMSD) of NmPin to parvulin homologs. RMSD values were calculated with YASARA using the alignment tool Mustang [84]

From: NmPin from the marine thaumarchaeote Nitrosopumilus maritimus is an active membrane associated prolyl isomerase

Structure

PDB ID

RMSD (Cα) [Å]

Aligned residues

% Seq. identity

Citation

CsPinA

2RQS

1.281

88

78.4

[26]

hPin1_PPIase

1NMW

1.301

89

44.9

[85]

SaPrsA_PPIase

2JZV

1.302

84

54.8

[25]

TbPin1_PPIase

2LJ4

1.382

89

38.2

[86]

hPar14_PPIase

3UI4

1.715

86

46.5

[40]

EcPpiD_PPIase

2KGJ

1.732

80

30.0

[20]

AtPin1

1J6Y

1.905

86

39.5

[42]

EcPar10

1JNT

2.267

84

41.7

[27]

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BMC Biology

ISSN: 1741-7007

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