Fig. 3

Summary of results of RNAi-RNAseq experiment. a General results of RNAi-RNAseq. The BMP^kd < H₂O class consisted of genes showing decreased expression after BMP RNAi compared to water-injected embryos, and no significant difference after Toll RNAi. The Toll^kd < H₂O class comprised genes showing decreased expression after Toll RNAi compared to control, and no significant difference after BMP RNAi. The Toll^kd > BMP^kd class consisted of genes in which differential expression was detected only when the Toll and BMP knockdowns were compared. The Toll^kd < H₂O < BMPkd class contained genes that were, relative to control, significantly reduced in Toll RNAi and increased in BMP RNAi. The Toll^kd < BMP^kd class included genes that were only detected when Toll and BMP samples were compared, and where expression was reduced in Toll RNAi. The Toll^kd > H₂O > BMP^kd class included genes that increased in Toll RNAi and decreased in BMP RNAi relative to water-injected embryos. The BMP^kd > Toll^kd class contained genes that were detected only when BMP and Toll expression levels were compared, with BMP RNAi expression levels being higher than Toll RNAi. b Enumeration of expression patterns of genes discovered in this analysis. c Enumeration of functional classes of genes discovered in this analysis. d Enumeration of homology status of genes uncovered in this analysis