Skip to main content

Table 1 RNA-dependent RNA polymerases in the land plant transcriptome libraries from the 1000 Plants Genomes Project

From: Changes in the composition of the RNA virome mark evolutionary transitions in green plants

Phylum; Class; (group without taxonomic rank); Order 1000 Plants Genomes Project Library name and species Double-stranded RNA viruses: phylogeny-based assignment or nearest match-based assignment (−)RNA viruses: phylogeny-based assignment or nearest match-based assignment (+) RNA viruses: phylogeny-based assignment or nearest match-based assignment
Chlorophyta; (no class assigned);(prasinophytes); Pyramimonadales TNAW Pyramimonas parkeae Basal group in picornavirus-like Clade 2, partitivirus   
Chlorophyta; Chlorophyceae; Chlamydomonadales Chlamydomonas acidophila Basal group in picornavirus-like Clade 2   
Streptophyta; Zygnemophyceae; Desmidiales AEKF Penium margaritaceum Unplaced picornavirus-like virus   
Streptophyta; Zygnemophyceae; Zygnematales JOJQ Cylindrocystis cushleckae New unplaced clade of dsRNA viruses   
Streptophyta; Zygnemophyceae; Zygnematales HAOX Spirogyra sp. New unplaced clade of dsRNA viruses   
Streptophyta; Coleochaetophyceae; Coleochaetales DRGY Chaetosphaeridium globosum New totivirus, sister branch to Saccharomyces cerevisiae virus L-A   
Streptophyta; Coleochaetophyceae; Coleochaetales QPDY Coleochaete irregularis Totivirus   
Bryophyta; Marchantiopsida; Marchantiales TFYI Marchantia emarginata Partitivirus   
Bryophyta; Marchantiopsida; Marchantiales JPYU Marchantia polymorpha Partitivirus   Potexvirus
Bryophyta; Jungermanniopsida; Metzgeriales NRWZ Metzgeria crassipilis Partitivirus   
Bryophyta; Jungermanniopsida; Jungermanniales WZYK Bazzania trilobata Partitivirus Bunyavirus Tobamovirus
Bryophyta; Sphagnopsida; Sphagnales GOWD Sphagnum lescurii    Hepevirus, ourmiavirus, secovirus
Bryophyta; Bryopsida; Hypnales JADL Rhynchostegium serrulatum   New clade in Rhynchostegium and Hedwigia  
Bryophyta; Bryopsida; Hypnales QMWB Anomodon attenuatus    Hepevirus, tobamovirus
Bryophyta; Bryopsida; Hypnales ZACW Leucodon brachypus    Potyvirus
Bryophyta; Bryopsida; Hedwigiales YWNF Hedwigia ciliata   New clade in Rhynchostegium and Hedwigia  
Bryophyta; Anthocerotopsida; Anthocerotales DXOU Nothoceros aenigmaticus Totivirus?   
Bryophyta; Anthocerotopsida; Anthocerotales TCBC Nothoceros vincentianus New alphapartitivirus   Hepevirus
Pteridophyta; Lycopodiopsida; Lycopodiales GAON Huperzia squarrosa Partitivirus   
Pteridophyta; Lycopodiopsida; Lycopodiales UPMJ Pseudolycopodiella caroliniana   Ophiovirus Iflavirus, waikavirus
Pteridophyta; Lycopodiopsida; Selaginellales ZZOL Selaginella stauntoniana    Hepevirus
Pteridophyta; Equisetopsida; Equisetales CAPN Equisetum diffusum Basal group in picornavirus-like Clade 2   
Spermatophyta; Ginkgoopsida; Ginkgoales SGTW Ginkgo biloba Partitivirus   
Spermatophyta; Gnetopsida; Gnetales GTHK Gnetum montanum Mitovirus   Marafivirus, secovirus, capillovirus
Spermatophyta; Pinopsida; Podocarpales EGLZ Prumnopitys andina Partitivirus   
Spermatophyta; Pinopsida; Pinales PINU Pinus taeda    Cilevirus
Spermatophyta; Pinopsida; Cupressales XMGP Juniperus scopulorum Partitivirus   
Spermatophyta; Pinopsida; Cupressales YFZK Sciadopitys verticillata   Varicosavirus  
Total number of new viruses   24 (7 assigned, 17 matched) 8 (4 assigned, 4 matched) 15 (1 assigned, 14 matched)