Table 1 RNA-dependent RNA polymerases in the land plant transcriptome libraries from the 1000 Plants Genomes Project
From: Changes in the composition of the RNA virome mark evolutionary transitions in green plants
Phylum; Class; (group without taxonomic rank); Order | 1000 Plants Genomes Project Library name and species | Double-stranded RNA viruses: phylogeny-based assignment or nearest match-based assignment | (−)RNA viruses: phylogeny-based assignment or nearest match-based assignment | (+) RNA viruses: phylogeny-based assignment or nearest match-based assignment |
|---|---|---|---|---|
Chlorophyta; (no class assigned);(prasinophytes); Pyramimonadales | TNAW Pyramimonas parkeae | Basal group in picornavirus-like Clade 2, partitivirus | Â | Â |
Chlorophyta; Chlorophyceae; Chlamydomonadales | Chlamydomonas acidophila | Basal group in picornavirus-like Clade 2 | Â | Â |
Streptophyta; Zygnemophyceae; Desmidiales | AEKF Penium margaritaceum | Unplaced picornavirus-like virus | Â | Â |
Streptophyta; Zygnemophyceae; Zygnematales | JOJQ Cylindrocystis cushleckae | New unplaced clade of dsRNA viruses | Â | Â |
Streptophyta; Zygnemophyceae; Zygnematales | HAOX Spirogyra sp. | New unplaced clade of dsRNA viruses | Â | Â |
Streptophyta; Coleochaetophyceae; Coleochaetales | DRGY Chaetosphaeridium globosum | New totivirus, sister branch to Saccharomyces cerevisiae virus L-A | Â | Â |
Streptophyta; Coleochaetophyceae; Coleochaetales | QPDY Coleochaete irregularis | Totivirus | Â | Â |
Bryophyta; Marchantiopsida; Marchantiales | TFYI Marchantia emarginata | Partitivirus | Â | Â |
Bryophyta; Marchantiopsida; Marchantiales | JPYU Marchantia polymorpha | Partitivirus | Â | Potexvirus |
Bryophyta; Jungermanniopsida; Metzgeriales | NRWZ Metzgeria crassipilis | Partitivirus | Â | Â |
Bryophyta; Jungermanniopsida; Jungermanniales | WZYK Bazzania trilobata | Partitivirus | Bunyavirus | Tobamovirus |
Bryophyta; Sphagnopsida; Sphagnales | GOWD Sphagnum lescurii | Â | Â | Hepevirus, ourmiavirus, secovirus |
Bryophyta; Bryopsida; Hypnales | JADL Rhynchostegium serrulatum | Â | New clade in Rhynchostegium and Hedwigia | Â |
Bryophyta; Bryopsida; Hypnales | QMWB Anomodon attenuatus | Â | Â | Hepevirus, tobamovirus |
Bryophyta; Bryopsida; Hypnales | ZACW Leucodon brachypus | Â | Â | Potyvirus |
Bryophyta; Bryopsida; Hedwigiales | YWNF Hedwigia ciliata | Â | New clade in Rhynchostegium and Hedwigia | Â |
Bryophyta; Anthocerotopsida; Anthocerotales | DXOU Nothoceros aenigmaticus | Totivirus? | Â | Â |
Bryophyta; Anthocerotopsida; Anthocerotales | TCBC Nothoceros vincentianus | New alphapartitivirus | Â | Hepevirus |
Pteridophyta; Lycopodiopsida; Lycopodiales | GAON Huperzia squarrosa | Partitivirus | Â | Â |
Pteridophyta; Lycopodiopsida; Lycopodiales | UPMJ Pseudolycopodiella caroliniana | Â | Ophiovirus | Iflavirus, waikavirus |
Pteridophyta; Lycopodiopsida; Selaginellales | ZZOL Selaginella stauntoniana | Â | Â | Hepevirus |
Pteridophyta; Equisetopsida; Equisetales | CAPN Equisetum diffusum | Basal group in picornavirus-like Clade 2 | Â | Â |
Spermatophyta; Ginkgoopsida; Ginkgoales | SGTW Ginkgo biloba | Partitivirus | Â | Â |
Spermatophyta; Gnetopsida; Gnetales | GTHK Gnetum montanum | Mitovirus | Â | Marafivirus, secovirus, capillovirus |
Spermatophyta; Pinopsida; Podocarpales | EGLZ Prumnopitys andina | Partitivirus | Â | Â |
Spermatophyta; Pinopsida; Pinales | PINU Pinus taeda | Â | Â | Cilevirus |
Spermatophyta; Pinopsida; Cupressales | XMGP Juniperus scopulorum | Partitivirus | Â | Â |
Spermatophyta; Pinopsida; Cupressales | YFZK Sciadopitys verticillata | Â | Varicosavirus | Â |
Total number of new viruses | Â | 24 (7 assigned, 17 matched) | 8 (4 assigned, 4 matched) | 15 (1 assigned, 14 matched) |