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Table 3 Relative expression of putative differentially expressed predicted gene models in R35 ovaries relative to m115 and m134 ovaries as determined by qRT-PCR

From: Generation of an integrated Hieracium genomic and transcriptomic resource enables exploration of small RNA pathways during apomixis initiation

Predicted gene ID Annotation R35:m115 MMC AvglogFC (SD) R35:m115 FM AvglogFC (SD) R35:m134 MMC AvglogFC (SD) R35:m134 FM AvglogFC (SD)
augustus-D18g-s1064104.g619280 SDE3-related nd 0.02 (0.13) nd 0.34 (0.24)
augustus-D18g-s14661.g22078 Aluminium-induced protein nd 0.34 (0.13) nd nd
augustus-D18g-s179972.g197694 EXORDIUM-related (HpEXO-like) 8.15 (0.53)a 6.00 (0.61)a 7.19 (1.85)a 4.66 (0.47)a
augustus-D18g-s204206.g212029 DUF584 nd nd nd 0.33 (0.11)
augustus-D18g-s221502.g225572 Glucan synthase-like nd 0.04 (0.08) nd 0.01 (0.08)
augustus-D18g-s227925.g234365 Cytochrome P450 nd nd 5.79 (0.98)a 4.74 (1.33)a
augustus-D18g-s228894.g235636 S/T protein kinase nd −0.20 (0.35) nd −0.41 (0.12)
augustus-D18g-s250182.g259844 NRPD1B-related nd 0.00 (0.14) nd 0.66 (0.06)
augustus-D18g-s255108.g264963 Lipoxygenase (HpLOX2) 2.87 (0.37)a 2.40 (0.42)a 2.75 (1.92)a 1.94 (0.59)a
augustus-D18g-s276058.g281382 Nuclear matrix protein nd nd nd −0.03 (0.15)
augustus-D18g-s335972.g331650 Laccase 5.10 (0.30)a 2.84 (0.22)a 4.97 (0.50)a 4.06 (0.34)a
augustus-D18g-s33935.g43705 DCL4-related nd −0.04 (0.13) nd −0.12 (0.13)
augustus-D18g-s341112.g335498 LOB domain 1.83 (0.16)a 1.68 (0.23)a 1.99 (0.47)a 2.40 (0.10)a
augustus-D18g-s541698.g482507 Pentatricopeptide −2.64 (0.28)a −3.08 (0.21)a −2.52 (0.45)a −2.69 (0.09)a
augustus-D18g-s562621.g490922 DCL2-related nd −0.19 (0.46) nd 0.15 (0.09)
augustus-D18g-s569078.g495478 CBS domain nd nd nd 0.38 (0.08)
augustus-D18g-s573721.g500128 TIR-2 TMV R 19.61 (0.05)a 15.73 (3.55)a 19.74 (0.42)a 18.34 (1.83)a
augustus-D18g-s636193.g536033 Cinnamic acid-dihydrodiol nd −0.14 (1.6) nd nd
augustus-D18g-s724133.g556087 Alcohol dehydrogenase 1.87 (0.56)a 1.94 (0.41)a nd nd
augustus-D18g-s742950.g560669 Myrosinase binding 4.45 (0.75)a 5.44 (0.77)a nd nd
augustus-D18g-s766362.g567064 Metal ion binding protein nd 0.28 (0.16) nd nd
augustus-D18g-s857898.g586359 DUF674 nd nd 5.04 (0.46)a 5.11 (0.08)a
  1. AvglogFC average log2 fold change (ΔΔCt) of two biological replicates with two technical replicates
  2. SD standard deviation
  3. nd not determined
  4. aUnpaired ttest P value < 0.05
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