TY - JOUR AU - Jones, J. D. G. AU - Dangl, J. L. PY - 2006 DA - 2006// TI - The plant immune system JO - Nature VL - 444 UR - https://doi.org/10.1038/nature05286 DO - 10.1038/nature05286 ID - Jones2006 ER - TY - JOUR AU - Dodds, P. N. AU - Rathjen, J. P. PY - 2010 DA - 2010// TI - Plant immunity: towards an integrated view of plant–pathogen interactions JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2812 DO - 10.1038/nrg2812 ID - Dodds2010 ER - TY - JOUR AU - Dangl, J. L. AU - Horvath, D. M. AU - Staskawicz, B. J. PY - 2013 DA - 2013// TI - Pivoting the plant immune system from dissection to deployment JO - Science VL - 341 UR - https://doi.org/10.1126/science.1236011 DO - 10.1126/science.1236011 ID - Dangl2013 ER - TY - JOUR AU - Stahl, E. A. AU - Dwyer, G. AU - Mauricio, R. AU - Kreitman, M. AU - Bergelson, J. PY - 1999 DA - 1999// TI - Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis JO - Nature VL - 400 UR - https://doi.org/10.1038/23260 DO - 10.1038/23260 ID - Stahl1999 ER - TY - JOUR AU - Heath, M. C. PY - 2000 DA - 2000// TI - Nonhost resistance and nonspecific plant defenses JO - Curr Opin Plant Biol VL - 3 UR - https://doi.org/10.1016/S1369-5266(00)00087-X DO - 10.1016/S1369-5266(00)00087-X ID - Heath2000 ER - TY - JOUR AU - Mysore, K. S. AU - Ryu, C. -. M. PY - 2004 DA - 2004// TI - Nonhost resistance: how much do we know? JO - Trends Plant Sci VL - 9 UR - https://doi.org/10.1016/j.tplants.2003.12.005 DO - 10.1016/j.tplants.2003.12.005 ID - Mysore2004 ER - TY - JOUR AU - Schulze-Lefert, P. AU - Panstruga, R. PY - 2011 DA - 2011// TI - A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation JO - Trends Plant Sci VL - 16 UR - https://doi.org/10.1016/j.tplants.2011.01.001 DO - 10.1016/j.tplants.2011.01.001 ID - Schulze-Lefert2011 ER - TY - JOUR AU - Thines, M. PY - 2014 DA - 2014// TI - Phylogeny and evolution of plant pathogenic oomycetes—a global overview JO - Eur J Plant Pathol VL - 138 UR - https://doi.org/10.1007/s10658-013-0366-5 DO - 10.1007/s10658-013-0366-5 ID - Thines2014 ER - TY - JOUR AU - Thines, M. AU - Choi, Y. J. AU - Kemen, E. AU - Ploch, S. AU - Holub, E. B. AU - Shin, H. D. PY - 2009 DA - 2009// TI - A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae) JO - Persoonia. VL - 22 UR - https://doi.org/10.3767/003158509X457931 DO - 10.3767/003158509X457931 ID - Thines2009 ER - TY - STD TI - McMullan M, Gardiner A, Bailey K, Kemen E, Ward BJ, Cevik V, et al. Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. elife. 2015;4:e04550. ID - ref10 ER - TY - JOUR AU - Cooper, A. J. AU - Latunde-Dada, A. O. AU - Woods-Tör, A. AU - Lynn, J. AU - Lucas, J. A. AU - Crute, I. R. PY - 2008 DA - 2008// TI - Basic compatibility of Albugo candida in Arabidopsis thaliana and Brassica juncea causes broad-spectrum suppression of innate immunity JO - Mol Plant-Microbe Interact VL - 21 UR - https://doi.org/10.1094/MPMI-21-6-0745 DO - 10.1094/MPMI-21-6-0745 ID - Cooper2008 ER - TY - JOUR AU - Belhaj, K. AU - Cano, L. M. AU - Prince, D. C. AU - Kemen, A. AU - Yoshida, K. AU - Dagdas, Y. F. PY - 2017 DA - 2017// TI - Arabidopsis late blight: infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans JO - Cell Microbiol VL - 19 UR - https://doi.org/10.1111/cmi.12628 DO - 10.1111/cmi.12628 ID - Belhaj2017 ER - TY - JOUR AU - Haverkort, A. J. AU - Struik, P. C. AU - Visser, R. G. F. AU - Jacobsen, E. PY - 2009 DA - 2009// TI - Applied biotechnology to combat late blight in potato caused by Phytophthora infestans JO - Potato Res VL - 52 UR - https://doi.org/10.1007/s11540-009-9136-3 DO - 10.1007/s11540-009-9136-3 ID - Haverkort2009 ER - TY - CHAP AU - Damme, M. AU - Schornack, S. AU - Cano, L. M. AU - Huitema, E. AU - Kamoun, S. ED - Lamour, K. ED - Kamoun, S. PY - 2009 DA - 2009// TI - Interactions between Phytophthora infestans and Solanum BT - Oomycete Genetics and Genomics: Diversity, Interactions and Research Tools PB - Wiley-Blackwell CY - Hoboken, New Jersey UR - https://doi.org/10.1002/9780470475898.ch14 DO - 10.1002/9780470475898.ch14 ID - Damme2009 ER - TY - JOUR AU - Vleeshouwers, V. G. A. A. AU - Dooijeweert, W. AU - Govers, F. AU - Kamoun, S. AU - Colon, L. T. PY - 2000 DA - 2000// TI - The hypersensitive response is associated with host and nonhost resistance to Phytophthora infestans JO - Planta VL - 210 UR - https://doi.org/10.1007/s004250050690 DO - 10.1007/s004250050690 ID - Vleeshouwers2000 ER - TY - JOUR AU - Huitema, E. AU - Vleeshouwers, V. G. A. A. AU - Francis, D. M. AU - Kamoun, S. PY - 2003 DA - 2003// TI - Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans JO - Mol Plant Pathol VL - 4 UR - https://doi.org/10.1046/j.1364-3703.2003.00195.x DO - 10.1046/j.1364-3703.2003.00195.x ID - Huitema2003 ER - TY - JOUR AU - Westphal, L. AU - Scheel, D. AU - Rosahl, S. PY - 2008 DA - 2008// TI - The coi1-16 mutant harbors a second site mutation rendering PEN2 nonfunctional JO - Plant Cell Online VL - 20 UR - https://doi.org/10.1105/tpc.107.056895 DO - 10.1105/tpc.107.056895 ID - Westphal2008 ER - TY - JOUR AU - Bednarek, P. AU - Piślewska-Bednarek, M. AU - Svatoš, A. AU - Schneider, B. AU - Doubský, J. AU - Mansurova, M. PY - 2009 DA - 2009// TI - A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense JO - Science VL - 323 UR - https://doi.org/10.1126/science.1163732 DO - 10.1126/science.1163732 ID - Bednarek2009 ER - TY - JOUR AU - Stein, M. AU - Dittgen, J. AU - Sánchez-Rodríguez, C. AU - Hou, B. -. H. AU - Molina, A. AU - Schulze-Lefert, P. PY - 2006 DA - 2006// TI - Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.038372 DO - 10.1105/tpc.105.038372 ID - Stein2006 ER - TY - JOUR AU - Lu, X. AU - Dittgen, J. AU - Piślewska-Bednarek, M. AU - Molina, A. AU - Schneider, B. AU - Svatoš, A. PY - 2015 DA - 2015// TI - Mutant allele-specific uncoupling of PENETRATION3 functions reveals engagement of the ATP-binding cassette transporter in distinct tryptophan metabolic pathways JO - Plant Physiol VL - 168 UR - https://doi.org/10.1104/pp.15.00182 DO - 10.1104/pp.15.00182 ID - Lu2015 ER - TY - JOUR AU - Xu, J. AU - Meng, J. AU - Meng, X. AU - Zhao, Y. AU - Liu, J. AU - Sun, T. PY - 2016 DA - 2016// TI - Pathogen-responsive MPK3 and MPK6 reprogram the biosynthesis of indole glucosinolates and their derivatives in Arabidopsis immunity JO - Plant Cell VL - 28 UR - https://doi.org/10.1105/tpc.15.00871 DO - 10.1105/tpc.15.00871 ID - Xu2016 ER - TY - JOUR AU - Kobae, Y. AU - Sekino, T. AU - Yoshioka, H. AU - Nakagawa, T. AU - Martinoia, E. AU - Maeshima, M. PY - 2006 DA - 2006// TI - Loss of AtPDR8, a plasma membrane ABC transporter of Arabidopsis thaliana, causes hypersensitive cell death upon pathogen infection JO - Plant Cell Physiol VL - 47 UR - https://doi.org/10.1093/pcp/pcj001 DO - 10.1093/pcp/pcj001 ID - Kobae2006 ER - TY - JOUR AU - Lipka, V. AU - Dittgen, J. AU - Bednarek, P. AU - Bhat, R. AU - Wiermer, M. AU - Stein, M. PY - 2005 DA - 2005// TI - Pre- and postinvasion defenses both contribute to nonhost resistance in Arabidopsis JO - Science VL - 310 UR - https://doi.org/10.1126/science.1119409 DO - 10.1126/science.1119409 ID - Lipka2005 ER - TY - JOUR AU - Kopischke, M. AU - Westphal, L. AU - Schneeberger, K. AU - Clark, R. AU - Ossowski, S. AU - Wewer, V. PY - 2013 DA - 2013// TI - Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans JO - Plant J VL - 73 UR - https://doi.org/10.1111/tpj.12046 DO - 10.1111/tpj.12046 ID - Kopischke2013 ER - TY - JOUR AU - Geissler, K. AU - Eschen-Lippold, L. AU - Naumann, K. AU - Schneeberger, K. AU - Weigel, D. AU - Scheel, D. PY - 2015 DA - 2015// TI - Mutations in EDR1 gene alter the response of Arabidopsis thaliana to Phytophthora infestans and the bacterial PAMPs, flg22 and elf18 JO - Mol Plant-Microbe Interact VL - 28 UR - https://doi.org/10.1094/MPMI-09-14-0282-R DO - 10.1094/MPMI-09-14-0282-R ID - Geissler2015 ER - TY - JOUR AU - Bednarek, P. AU - Piślewska-Bednarek, M. AU - Ver Loren van Themaat, E. AU - Maddula, R. K. AU - Svatoš, A. AU - Schulze-Lefert, P. PY - 2011 DA - 2011// TI - Conservation and clade-specific diversification of pathogen-inducible tryptophan and indole glucosinolate metabolism in Arabidopsis thaliana relatives JO - New Phytol VL - 192 UR - https://doi.org/10.1111/j.1469-8137.2011.03824.x DO - 10.1111/j.1469-8137.2011.03824.x ID - Bednarek2011 ER - TY - JOUR AU - Piasecka, A. AU - Jedrzejczak-Rey, N. AU - Bednarek, P. PY - 2015 DA - 2015// TI - Secondary metabolites in plant innate immunity: conserved function of divergent chemicals JO - New Phytol VL - 206 UR - https://doi.org/10.1111/nph.13325 DO - 10.1111/nph.13325 ID - Piasecka2015 ER - TY - JOUR AU - Mithen, R. AU - Bennett, R. AU - Marquez, J. PY - 2010 DA - 2010// TI - Glucosinolate biochemical diversity and innovation in the Brassicales JO - Phytochemistry VL - 71 UR - https://doi.org/10.1016/j.phytochem.2010.09.017 DO - 10.1016/j.phytochem.2010.09.017 ID - Mithen2010 ER - TY - JOUR AU - Bednarek, P. PY - 2012 DA - 2012// TI - Chemical warfare or modulators of defence responses – the function of secondary metabolites in plant immunity JO - Curr Opin Plant Biol VL - 15 UR - https://doi.org/10.1016/j.pbi.2012.03.002 DO - 10.1016/j.pbi.2012.03.002 ID - Bednarek2012 ER - TY - JOUR AU - Bednarek, P. PY - 2012 DA - 2012// TI - Sulfur-containing secondary metabolites from Arabidopsis thaliana and other Brassicaceae with function in plant immunity JO - ChemBioChem VL - 13 UR - https://doi.org/10.1002/cbic.201200086 DO - 10.1002/cbic.201200086 ID - Bednarek2012 ER - TY - JOUR AU - Wang, Y. A. N. AU - Bouwmeester, K. AU - Mortel, J. E. AU - Shan, W. AU - Govers, F. PY - 2013 DA - 2013// TI - A novel Arabidopsis–oomycete pathosystem: differential interactions with Phytophthora capsici reveal a role for camalexin, indole glucosinolates and salicylic acid in defence JO - Plant Cell Environ VL - 36 UR - https://doi.org/10.1111/pce.12052 DO - 10.1111/pce.12052 ID - Wang2013 ER - TY - JOUR AU - Schlaeppi, K. AU - Abou-Mansour, E. AU - Buchala, A. AU - Mauch, F. PY - 2010 DA - 2010// TI - Disease resistance of Arabidopsis to Phytophthora brassicae is established by the sequential action of indole glucosinolates and camalexin JO - Plant J VL - 62 UR - https://doi.org/10.1111/j.1365-313X.2010.04197.x DO - 10.1111/j.1365-313X.2010.04197.x ID - Schlaeppi2010 ER - TY - JOUR AU - Pedras, M. S. C. AU - Hossain, S. AU - Snitynsky, R. B. PY - 2011 DA - 2011// TI - Detoxification of cruciferous phytoalexins in Botrytis cinerea: spontaneous dimerization of a camalexin metabolite JO - Phytochemistry VL - 72 UR - https://doi.org/10.1016/j.phytochem.2010.11.018 DO - 10.1016/j.phytochem.2010.11.018 ID - Pedras2011 ER - TY - JOUR AU - Pedras, M. S. C. AU - Abdoli, A. PY - 2013 DA - 2013// TI - Metabolism of the phytoalexins camalexins, their bioisosteres and analogues in the plant pathogenic fungus Alternaria brassicicola JO - Bioorg Med Chem VL - 21 UR - https://doi.org/10.1016/j.bmc.2013.05.026 DO - 10.1016/j.bmc.2013.05.026 ID - Pedras2013 ER - TY - JOUR AU - Pedras, M. S. C. AU - Ahiahonu, P. W. K. PY - 2002 DA - 2002// TI - Probing the phytopathogenic stem rot fungus with phytoalexins and analogues: unprecedented glucosylation of camalexin and 6-methoxycamalexin JO - Bioorg Med Chem VL - 10 UR - https://doi.org/10.1016/S0968-0896(02)00208-0 DO - 10.1016/S0968-0896(02)00208-0 ID - Pedras2002 ER - TY - JOUR AU - Vlot, A. C. AU - Dempsey, D. M. A. AU - Klessig, D. F. PY - 2009 DA - 2009// TI - Salicylic acid, a multifaceted hormone to combat disease JO - Annu Rev Phytopathol VL - 47 UR - https://doi.org/10.1146/annurev.phyto.050908.135202 DO - 10.1146/annurev.phyto.050908.135202 ID - Vlot2009 ER - TY - JOUR AU - Boatwright, J. L. AU - Pajerowska-Mukhtar, K. PY - 2013 DA - 2013// TI - Salicylic acid: an old hormone up to new tricks JO - Mol Plant Pathol VL - 14 UR - https://doi.org/10.1111/mpp.12035 DO - 10.1111/mpp.12035 ID - Boatwright2013 ER - TY - JOUR AU - Tsuda, K. AU - Mine, A. AU - Bethke, G. AU - Igarashi, D. AU - Botanga, C. J. AU - Tsuda, Y. PY - 2013 DA - 2013// TI - Dual regulation of gene expression mediated by extended MAPK activation and salicylic acid contributes to robust innate immunity in Arabidopsis thaliana JO - PLoS Genet VL - 9 UR - https://doi.org/10.1371/journal.pgen.1004015 DO - 10.1371/journal.pgen.1004015 ID - Tsuda2013 ER - TY - JOUR AU - Mishina, T. E. AU - Zeier, J. PY - 2007 DA - 2007// TI - Pathogen-associated molecular pattern recognition rather than development of tissue necrosis contributes to bacterial induction of systemic acquired resistance in Arabidopsis JO - Plant J VL - 50 UR - https://doi.org/10.1111/j.1365-313X.2007.03067.x DO - 10.1111/j.1365-313X.2007.03067.x ID - Mishina2007 ER - TY - JOUR AU - Tsuda, K. AU - Sato, M. AU - Glazebrook, J. AU - Cohen, J. D. AU - Katagiri, F. PY - 2008 DA - 2008// TI - Interplay between MAMP-triggered and SA-mediated defense responses JO - Plant J VL - 53 UR - https://doi.org/10.1111/j.1365-313X.2007.03369.x DO - 10.1111/j.1365-313X.2007.03369.x ID - Tsuda2008 ER - TY - JOUR AU - Nawrath, C. AU - Métraux, J. -. P. PY - 1999 DA - 1999// TI - Salicylic acid induction–deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation JO - Plant Cell VL - 11 ID - Nawrath1999 ER - TY - JOUR AU - An, C. AU - Mou, Z. PY - 2012 DA - 2012// TI - Non-host defense response in a novel Arabidopsis-Xanthomonas citri subsp. citri pathosystem JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0031130 DO - 10.1371/journal.pone.0031130 ID - An2012 ER - TY - JOUR AU - Tanaka, S. AU - Han, X. AU - Kahmann, R. PY - 2015 DA - 2015// TI - Microbial effectors target multiple steps in the salicylic acid production and signaling pathway JO - Front Plant Sci. VL - 6 UR - https://doi.org/10.3389/fpls.2015.00349 DO - 10.3389/fpls.2015.00349 ID - Tanaka2015 ER - TY - JOUR AU - Whisson, S. C. AU - Boevink, P. C. AU - Moleleki, L. AU - Avrova, A. O. AU - Morales, J. G. AU - Gilroy, E. M. PY - 2007 DA - 2007// TI - A translocation signal for delivery of oomycete effector proteins into host plant cells JO - Nature VL - 450 UR - https://doi.org/10.1038/nature06203 DO - 10.1038/nature06203 ID - Whisson2007 ER - TY - JOUR AU - Caten, C. E. AU - Jinks, J. L. PY - 1968 DA - 1968// TI - Spontaneous variability of single isolates of Phytophthora infestans. I. Cultural variation JO - Can J Bot VL - 46 UR - https://doi.org/10.1139/b68-055 DO - 10.1139/b68-055 ID - Caten1968 ER - TY - JOUR AU - Kamoun, S. AU - West, P. AU - Vleeshouwers, V. G. A. A. AU - Groot, K. E. AU - Govers, F. PY - 1998 DA - 1998// TI - Resistance of Nicotiana benthamiana to Phytophthora infestans is mediated by the recognition of the elicitor protein INF1 JO - Plant Cell VL - 10 UR - https://doi.org/10.1105/tpc.10.9.1413 DO - 10.1105/tpc.10.9.1413 ID - Kamoun1998 ER - TY - JOUR AU - Kemen, E. AU - Gardiner, A. AU - Schultz-Larsen, T. AU - Kemen, A. C. AU - Balmuth, A. L. AU - Robert-Seilaniantz, A. PY - 2011 DA - 2011// TI - Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana JO - PLoS Biol VL - 9 UR - https://doi.org/10.1371/journal.pbio.1001094 DO - 10.1371/journal.pbio.1001094 ID - Kemen2011 ER - TY - JOUR AU - Xiao, S. AU - Ellwood, S. AU - Calis, O. AU - Patrick, E. AU - Li, T. AU - Coleman, M. PY - 2001 DA - 2001// TI - Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8 JO - Science VL - 291 UR - https://doi.org/10.1126/science.291.5501.118 DO - 10.1126/science.291.5501.118 ID - Xiao2001 ER - TY - JOUR AU - Caillaud, M. -. C. AU - Asai, S. AU - Rallapalli, G. AU - Piquerez, S. AU - Fabro, G. AU - Jones, J. D. G. PY - 2013 DA - 2013// TI - A downy mildew effector attenuates salicylic acid–triggered immunity in Arabidopsis by interacting with the host mediator complex JO - PLoS Biol VL - 11 UR - https://doi.org/10.1371/journal.pbio.1001732 DO - 10.1371/journal.pbio.1001732 ID - Caillaud2013 ER - TY - JOUR AU - Asai, S. AU - Rallapalli, G. AU - Piquerez, S. J. M. AU - Caillaud, M. -. C. AU - Furzer, O. J. AU - Ishaque, N. PY - 2014 DA - 2014// TI - Expression profiling during Arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid JO - PLoS Pathog VL - 10 UR - https://doi.org/10.1371/journal.ppat.1004443 DO - 10.1371/journal.ppat.1004443 ID - Asai2014 ER - TY - JOUR AU - Stefanato, F. L. AU - Abou-Mansour, E. AU - Buchala, A. AU - Kretschmer, M. AU - Mosbach, A. AU - Hahn, M. PY - 2009 DA - 2009// TI - The ABC transporter BcatrB from Botrytis cinerea exports camalexin and is a virulence factor on Arabidopsis thaliana JO - Plant J VL - 58 UR - https://doi.org/10.1111/j.1365-313X.2009.03794.x DO - 10.1111/j.1365-313X.2009.03794.x ID - Stefanato2009 ER - TY - JOUR AU - Schoonbeek, H. AU - Sorbo, G. AU - Waard, M. A. PY - 2001 DA - 2001// TI - The ABC transporter BcatrB affects the sensitivity of Botrytis cinerea to the phytoalexin resveratrol and the fungicide fenpiclonil JO - Mol Plant-Microbe Interact VL - 14 UR - https://doi.org/10.1094/MPMI.2001.14.4.562 DO - 10.1094/MPMI.2001.14.4.562 ID - Schoonbeek2001 ER - TY - JOUR AU - Kretschmer, M. AU - Leroch, M. AU - Mosbach, A. AU - Walker, A. -. S. AU - Fillinger, S. AU - Mernke, D. PY - 2009 DA - 2009// TI - Fungicide-driven evolution and molecular basis of multidrug resistance in field populations of the grey mould fungus Botrytis cinerea JO - PLoS Pathog VL - 5 UR - https://doi.org/10.1371/journal.ppat.1000696 DO - 10.1371/journal.ppat.1000696 ID - Kretschmer2009 ER - TY - JOUR AU - Leroch, M. AU - Mernke, D. AU - Koppenhoefer, D. AU - Schneider, P. AU - Mosbach, A. AU - Doehlemann, G. PY - 2011 DA - 2011// TI - Living colors in the gray mold pathogen Botrytis cinerea: Codon-optimized genes encoding green fluorescent protein and mCherry, which exhibit bright fluorescence JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.02644-10 DO - 10.1128/AEM.02644-10 ID - Leroch2011 ER - TY - JOUR AU - Kover, P. X. AU - Valdar, W. AU - Trakalo, J. AU - Scarcelli, N. AU - Ehrenreich, I. M. AU - Purugganan, M. D. PY - 2009 DA - 2009// TI - A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000551 DO - 10.1371/journal.pgen.1000551 ID - Kover2009 ER - TY - JOUR AU - Rallapalli, G. AU - Kemen, E. AU - Robert-Seilaniantz, A. AU - Segonzac, C. AU - Etherington, G. AU - Sohn, K. PY - 2014 DA - 2014// TI - EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics JO - BMC Genomics. VL - 15 UR - https://doi.org/10.1186/1471-2164-15-341 DO - 10.1186/1471-2164-15-341 ID - Rallapalli2014 ER - TY - JOUR AU - Edgar, R. AU - Domrachev, M. AU - Lash, A. E. PY - 2002 DA - 2002// TI - Gene Expression Omnibus: NCBI gene expression and hybridization array data repository JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.207 DO - 10.1093/nar/30.1.207 ID - Edgar2002 ER - TY - STD TI - The Arabidopsis Information Resource. www.arabidopsis.org. Accessed 3 Mar 2011. UR - http://www.arabidopsis.org/ ID - ref58 ER - TY - JOUR AU - Langmead, B. AU - Trapnell, C. AU - Pop, M. AU - Salzberg, S. PY - 2009 DA - 2009// TI - Ultrafast and memory-efficient alignment of short DNA sequences to the human genome JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-3-r25 DO - 10.1186/gb-2009-10-3-r25 ID - Langmead2009 ER - TY - STD TI - Novocraft. http://www.novocraft.com. UR - http://www.novocraft.com/ ID - ref60 ER - TY - STD TI - shyamrallapalli/publication_data. 2015. https://github.com/shyamrallapalli/publication_data/tree/master/2015_dprince_albugo. UR - https://github.com/shyamrallapalli/publication_data/tree/master/2015_dprince_albugo ID - ref61 ER - TY - STD TI - R Core Team. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2015. ID - ref62 ER - TY - JOUR AU - Gentleman, R. AU - Carey, V. AU - Bates, D. AU - Bolstad, B. AU - Dettling, M. AU - Dudoit, S. PY - 2004 DA - 2004// TI - Bioconductor: open software development for computational biology and bioinformatics JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-10-r80 DO - 10.1186/gb-2004-5-10-r80 ID - Gentleman2004 ER - TY - JOUR AU - Robinson, M. D. AU - McCarthy, D. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - edgeR: a Bioconductor package for differential expression analysis of digital gene expression data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp616 DO - 10.1093/bioinformatics/btp616 ID - Robinson2010 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate: a practical and powerful approach to multiple testing JO - J R Stat Soc Ser B Methodol VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Wang, D. AU - Amornsiripanitch, N. AU - Dong, X. PY - 2006 DA - 2006// TI - A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants JO - PLoS Pathog VL - 2 UR - https://doi.org/10.1371/journal.ppat.0020123 DO - 10.1371/journal.ppat.0020123 ID - Wang2006 ER - TY - JOUR AU - Goda, H. AU - Sasaki, E. AU - Akiyama, K. AU - Maruyama-Nakashita, A. AU - Nakabayashi, K. AU - Li, W. PY - 2008 DA - 2008// TI - The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access JO - Plant J VL - 55 UR - https://doi.org/10.1111/j.1365-313X.2008.03510.x DO - 10.1111/j.1365-313X.2008.03510.x ID - Goda2008 ER - TY - JOUR AU - Does, D. AU - Leon-Reyes, A. AU - Koornneef, A. AU - Verk, M. C. AU - Rodenburg, N. AU - Pauwels, L. PY - 2013 DA - 2013// TI - Salicylic acid suppresses jasmonic acid signaling downstream of SCFCOI1-JAZ by targeting GCC promoter motifs via transcription factor ORA59 JO - Plant Cell VL - 25 UR - https://doi.org/10.1105/tpc.112.108548 DO - 10.1105/tpc.112.108548 ID - Does2013 ER - TY - STD TI - Public Research Centre for Health. Venn Diagram. ID - ref69 ER - TY - STD TI - Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 2010;38 suppl 2:W64–70. ID - ref70 ER - TY - JOUR AU - Prince, D. C. AU - Drurey, C. AU - Zipfel, C. AU - Hogenhout, S. A. PY - 2014 DA - 2014// TI - The leucine-rich repeat receptor-like kinase brassinosteroid insensitive1-associated kinase1 and the cytochrome P450 phytoalexin deficient3 contribute to innate immunity to aphids in Arabidopsis JO - Plant Physiol VL - 164 UR - https://doi.org/10.1104/pp.114.235598 DO - 10.1104/pp.114.235598 ID - Prince2014 ER - TY - JOUR AU - Czechowski, T. AU - Stitt, M. AU - Altmann, T. AU - Udvardi, M. K. AU - Scheible, W. -. R. PY - 2005 DA - 2005// TI - Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis JO - Plant Physiol VL - 139 UR - https://doi.org/10.1104/pp.105.063743 DO - 10.1104/pp.105.063743 ID - Czechowski2005 ER - TY - STD TI - Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002;3(7):RESEARCH0034. ID - ref73 ER - TY - JOUR AU - Andersen, C. L. AU - Jensen, J. L. AU - Ørntoft, T. F. PY - 2004 DA - 2004// TI - Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets JO - Cancer Res VL - 64 UR - https://doi.org/10.1158/0008-5472.CAN-04-0496 DO - 10.1158/0008-5472.CAN-04-0496 ID - Andersen2004 ER - TY - STD TI - Le Pape S. EasyqpcR: EasyqpcR for easy analysis of real-time PCR data at IRTOMIT-INSERM U1082. R package. 2012. https://www.bioconductor.org/packages/release/bioc/html/EasyqpcR.html. Accessed 9 Sept 2015. UR - https://www.bioconductor.org/packages/release/bioc/html/EasyqpcR.html ID - ref75 ER - TY - JOUR AU - Rieu, I. AU - Powers, S. J. PY - 2009 DA - 2009// TI - Real-time quantitative RT-PCR: design, calculations, and statistics JO - Plant Cell VL - 21 UR - https://doi.org/10.1105/tpc.109.066001 DO - 10.1105/tpc.109.066001 ID - Rieu2009 ER - TY - JOUR AU - Kliebenstein, D. J. AU - Lambrix, V. M. AU - Reichelt, M. AU - Gershenzon, J. AU - Mitchell-Olds, T. PY - 2001 DA - 2001// TI - Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.3.681 DO - 10.1105/tpc.13.3.681 ID - Kliebenstein2001 ER - TY - JOUR AU - Brown, P. D. AU - Tokuhisa, J. G. AU - Reichelt, M. AU - Gershenzon, J. PY - 2003 DA - 2003// TI - Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana JO - Phytochemistry VL - 62 UR - https://doi.org/10.1016/S0031-9422(02)00549-6 DO - 10.1016/S0031-9422(02)00549-6 ID - Brown2003 ER - TY - JOUR AU - Reichelt, M. AU - Brown, P. D. AU - Schneider, B. AU - Oldham, N. J. AU - Stauber, E. AU - Tokuhisa, J. PY - 2002 DA - 2002// TI - Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana JO - Phytochemistry VL - 59 UR - https://doi.org/10.1016/S0031-9422(02)00014-6 DO - 10.1016/S0031-9422(02)00014-6 ID - Reichelt2002 ER - TY - JOUR AU - Fiebig, H. J. AU - Arens, M. PY - 1992 DA - 1992// TI - Glucosinolates (HPLC method) - Survey by a working party of the DGF, 128th report - German standard methods for investigation of fats, fatty products, tensides and related materials, 98th report - analysis of fat raw-materials 12 JO - Fett Wissenschaft Technol Fat Sci Technol VL - 94 ID - Fiebig1992 ER - TY - JOUR AU - Schoonbeek, H. -. j. AU - Jacquat-Bovet, A. -. C. PY - 2007 DA - 2007// TI - Mascher F, Métraux J-P. Oxalate-degrading bacteria can protect Arabidopsis thaliana and crop plants against Botrytis cinerea JO - Mol Plant-Microbe Interact VL - 20 UR - https://doi.org/10.1094/MPMI-20-12-1535 DO - 10.1094/MPMI-20-12-1535 ID - Schoonbeek2007 ER - TY - STD TI - X-gluc Direct. http://www.x-gluc.com. UR - http://www.x-gluc.com/ ID - ref82 ER - TY - STD TI - Spex Sample Prep. http://www.spexsampleprep.com. UR - http://www.spexsampleprep.com/ ID - ref83 ER - TY - JOUR AU - Jefferson, R. A. AU - Kavanagh, T. A. AU - Bevan, M. W. PY - 1987 DA - 1987// TI - GUS fusions - beta-glucuronidase as a sensitive and versatile gene fusion marker in higher-plants JO - EMBO J VL - 6 ID - Jefferson1987 ER - TY - JOUR AU - Gachon, C. AU - Saindrenan, P. PY - 2004 DA - 2004// TI - Real-time PCR monitoring of fungal development in Arabidopsis thaliana infected by Alternaria brassicicola and Botrytis cinerea JO - Plant Physiol Biochem VL - 42 UR - https://doi.org/10.1016/j.plaphy.2004.04.001 DO - 10.1016/j.plaphy.2004.04.001 ID - Gachon2004 ER - TY - JOUR AU - Schneider, C. A. AU - Rasband, W. S. AU - Eliceiri, K. W. PY - 2012 DA - 2012// TI - NIH Image to ImageJ: 25 years of image analysis JO - Nat Meth VL - 9 UR - https://doi.org/10.1038/nmeth.2089 DO - 10.1038/nmeth.2089 ID - Schneider2012 ER - TY - STD TI - RStudio. RStudio: Integrated development environment for R. Boston, MA: RStudio, Inc.; 2015. ID - ref87 ER - TY - JOUR AU - Clay, N. K. AU - Adio, A. M. AU - Denoux, C. AU - Jander, G. AU - Ausubel, F. M. PY - 2009 DA - 2009// TI - Glucosinolate metabolites required for an Arabidopsis innate immune response JO - Science VL - 323 UR - https://doi.org/10.1126/science.1164627 DO - 10.1126/science.1164627 ID - Clay2009 ER - TY - JOUR AU - Guo, R. AU - Qian, H. AU - Shen, W. AU - Liu, L. AU - Zhang, M. AU - Cai, C. PY - 2013 DA - 2013// TI - BZR1 and BES1 participate in regulation of glucosinolate biosynthesis by brassinosteroids in Arabidopsis JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ert094 DO - 10.1093/jxb/ert094 ID - Guo2013 ER - TY - JOUR AU - Sønderby, I. E. AU - Hansen, B. G. AU - Bjarnholt, N. AU - Ticconi, C. AU - Halkier, B. A. AU - Kliebenstein, D. J. PY - 2007 DA - 2007// TI - A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates JO - PLoS ONE VL - 2 UR - https://doi.org/10.1371/journal.pone.0001322 DO - 10.1371/journal.pone.0001322 ID - Sønderby2007 ER - TY - JOUR AU - Barth, C. AU - Jander, G. PY - 2006 DA - 2006// TI - Arabidopsis myrosinases TGG1 and TGG2 have redundant function in glucosinolate breakdown and insect defense JO - Plant J VL - 46 UR - https://doi.org/10.1111/j.1365-313X.2006.02716.x DO - 10.1111/j.1365-313X.2006.02716.x ID - Barth2006 ER - TY - JOUR AU - Ferrari, S. AU - Plotnikova, J. M. AU - Lorenzo, G. AU - Ausubel, F. M. PY - 2003 DA - 2003// TI - Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4 JO - Plant J VL - 35 UR - https://doi.org/10.1046/j.1365-313X.2003.01794.x DO - 10.1046/j.1365-313X.2003.01794.x ID - Ferrari2003 ER - TY - JOUR AU - Kliebenstein, D. J. AU - Rowe, H. C. AU - Denby, K. J. PY - 2005 DA - 2005// TI - Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity JO - Plant J VL - 44 UR - https://doi.org/10.1111/j.1365-313X.2005.02508.x DO - 10.1111/j.1365-313X.2005.02508.x ID - Kliebenstein2005 ER - TY - JOUR AU - Pieterse, C. M. J. AU - Does, D. AU - Zamioudis, C. AU - Leon-Reyes, A. AU - Wees, S. C. M. PY - 2012 DA - 2012// TI - Hormonal modulation of plant immunity JO - Annu Rev Cell Dev Biol VL - 28 UR - https://doi.org/10.1146/annurev-cellbio-092910-154055 DO - 10.1146/annurev-cellbio-092910-154055 ID - Pieterse2012 ER - TY - JOUR AU - Weigel, R. R. AU - Bäuscher, C. AU - Pfitzner, A. J. P. AU - Pfitzner, U. M. PY - 2001 DA - 2001// TI - NIMIN-1, NIMIN-2 and NIMIN-3, members of a novel family of proteins from Arabidopsis that interact with NPR1/NIM1, a key regulator of systemic acquired resistance in plants JO - Plant Mol Biol VL - 46 UR - https://doi.org/10.1023/A:1010652620115 DO - 10.1023/A:1010652620115 ID - Weigel2001 ER - TY - JOUR AU - Wildermuth, M. C. AU - Dewdney, J. AU - Wu, G. AU - Ausubel, F. M. PY - 2001 DA - 2001// TI - Isochorismate synthase is required to synthesize salicylic acid for plant defence JO - Nature VL - 414 UR - https://doi.org/10.1038/35107108 DO - 10.1038/35107108 ID - Wildermuth2001 ER - TY - JOUR AU - Wees, S. C. M. AU - Glazebrook, J. PY - 2003 DA - 2003// TI - Loss of non-host resistance of Arabidopsis NahG to Pseudomonas syringae pv. phaseolicola is due to degradation products of salicylic acid JO - Plant J VL - 33 UR - https://doi.org/10.1046/j.1365-313X.2003.01665.x DO - 10.1046/j.1365-313X.2003.01665.x ID - Wees2003 ER - TY - JOUR AU - Ruhe, J. AU - Agler, M. T. AU - Placzek, A. AU - Kramer, K. AU - Finkemeier, I. AU - Kemen, E. M. PY - 2016 DA - 2016// TI - Obligate biotroph pathogens of the genus Albugo are better adapted to active host defense compared to niche competitors JO - Front Plant Sci. VL - 7 UR - https://doi.org/10.3389/fpls.2016.00820 DO - 10.3389/fpls.2016.00820 ID - Ruhe2016 ER - TY - JOUR AU - Bilgin, D. D. AU - Zavala, J. A. AU - Zhu, J. I. N. AU - Clough, S. J. AU - Ort, D. R. AU - DeLucia, E. H. PY - 2010 DA - 2010// TI - Biotic stress globally downregulates photosynthesis genes JO - Plant Cell Environ VL - 33 UR - https://doi.org/10.1111/j.1365-3040.2010.02167.x DO - 10.1111/j.1365-3040.2010.02167.x ID - Bilgin2010 ER - TY - JOUR AU - Sanchez-Vallet, A. AU - Ramos, B. AU - Bednarek, P. AU - López, G. AU - Piślewska-Bednarek, M. AU - Schulze-Lefert, P. PY - 2010 DA - 2010// TI - Tryptophan-derived secondary metabolites in Arabidopsis thaliana confer non-host resistance to necrotrophic Plectosphaerella cucumerina fungi JO - Plant J VL - 63 ID - Sanchez-Vallet2010 ER - TY - JOUR AU - Bak, S. AU - Tax, F. E. AU - Feldmann, K. A. AU - Galbraith, D. W. AU - Feyereisen, R. PY - 2001 DA - 2001// TI - CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.1.101 DO - 10.1105/tpc.13.1.101 ID - Bak2001 ER - TY - JOUR AU - Smolen, G. AU - Bender, J. PY - 2002 DA - 2002// TI - Arabidopsis cytochrome P450 cyp83B1 mutations activate the tryptophan biosynthetic pathway JO - Genetics VL - 160 ID - Smolen2002 ER - TY - JOUR AU - Zhao, Y. AU - Hull, A. K. AU - Gupta, N. R. AU - Goss, K. A. AU - Alonso, J. AU - Ecker, J. R. PY - 2002 DA - 2002// TI - Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3 JO - Genes Dev VL - 16 UR - https://doi.org/10.1101/gad.1035402 DO - 10.1101/gad.1035402 ID - Zhao2002 ER - TY - JOUR AU - Glawischnig, E. AU - Hansen, B. G. AU - Olsen, C. E. AU - Halkier, B. A. PY - 2004 DA - 2004// TI - Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis JO - Proc Natl Acad Sci U S A VL - 101 UR - https://doi.org/10.1073/pnas.0305876101 DO - 10.1073/pnas.0305876101 ID - Glawischnig2004 ER - TY - JOUR AU - Hiruma, K. AU - Fukunaga, S. AU - Bednarek, P. AU - Piślewska-Bednarek, M. AU - Watanabe, S. AU - Narusaka, Y. PY - 2013 DA - 2013// TI - Glutathione and tryptophan metabolism are required for Arabidopsis immunity during the hypersensitive response to hemibiotrophs JO - Proc Natl Acad Sci VL - 110 UR - https://doi.org/10.1073/pnas.1305745110 DO - 10.1073/pnas.1305745110 ID - Hiruma2013 ER - TY - JOUR AU - Rajniak, J. AU - Barco, B. AU - Clay, N. K. AU - Sattely, E. S. PY - 2015 DA - 2015// TI - A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence JO - Nature VL - 525 UR - https://doi.org/10.1038/nature14907 DO - 10.1038/nature14907 ID - Rajniak2015 ER - TY - JOUR AU - Dobritzsch, M. AU - Lübken, T. AU - Eschen-Lippold, L. AU - Gorzolka, K. AU - Blum, E. AU - Matern, A. PY - 2016 DA - 2016// TI - MATE transporter-dependent export of hydroxycinnamic acid amides JO - Plant Cell VL - 28 UR - https://doi.org/10.1105/tpc.15.00706 DO - 10.1105/tpc.15.00706 ID - Dobritzsch2016 ER - TY - JOUR AU - Djamei, A. AU - Schipper, K. AU - Rabe, F. AU - Ghosh, A. AU - Vincon, V. AU - Kahnt, J. PY - 2011 DA - 2011// TI - Metabolic priming by a secreted fungal effector JO - Nature VL - 478 UR - https://doi.org/10.1038/nature10454 DO - 10.1038/nature10454 ID - Djamei2011 ER - TY - JOUR AU - Tanaka, S. AU - Brefort, T. AU - Neidig, N. AU - Djamei, A. AU - Kahnt, J. AU - Vermerris, W. PY - 2014 DA - 2014// TI - A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize JO - elife VL - 3 UR - https://doi.org/10.7554/eLife.01355 DO - 10.7554/eLife.01355 ID - Tanaka2014 ER - TY - JOUR AU - Roetschi, A. AU - Si-Ammour, A. AU - Belbahri, L. AU - Mauch, F. AU - Mauch-Mani, B. PY - 2001 DA - 2001// TI - Characterization of an Arabidopsis–Phytophthora Pathosystem: resistance requires a functional PAD2 gene and is independent of salicylic acid, ethylene and jasmonic acid signalling JO - Plant J VL - 28 UR - https://doi.org/10.1046/j.1365-313X.2001.01148.x DO - 10.1046/j.1365-313X.2001.01148.x ID - Roetschi2001 ER - TY - JOUR AU - Fabro, G. AU - Steinbrenner, J. AU - Coates, M. AU - Ishaque, N. AU - Baxter, L. AU - Studholme, D. J. PY - 2011 DA - 2011// TI - Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity JO - PLoS Pathog VL - 7 UR - https://doi.org/10.1371/journal.ppat.1002348 DO - 10.1371/journal.ppat.1002348 ID - Fabro2011 ER - TY - JOUR AU - Bos, J. I. B. AU - Prince, D. AU - Pitino, M. AU - Maffei, M. E. AU - Win, J. AU - Hogenhout, S. A. PY - 2010 DA - 2010// TI - A functional genomics approach identifies candidate effectors from the aphid species Myzus persicae (Green Peach Aphid) JO - PLoS Genet VL - 6 UR - https://doi.org/10.1371/journal.pgen.1001216 DO - 10.1371/journal.pgen.1001216 ID - Bos2010 ER - TY - JOUR AU - Buxdorf, K. AU - Yaffe, H. AU - Barda, O. AU - Levy, M. PY - 2013 DA - 2013// TI - The effects of glucosinolates and their breakdown products on necrotrophic fungi JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0070771 DO - 10.1371/journal.pone.0070771 ID - Buxdorf2013 ER - TY - JOUR AU - Frerigmann, H. AU - Gigolashvili, T. PY - 2014 DA - 2014// TI - MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana JO - Mol Plant VL - 7 UR - https://doi.org/10.1093/mp/ssu004 DO - 10.1093/mp/ssu004 ID - Frerigmann2014 ER -